KEGG   Antechinus flavipes (yellow-footed antechinus): 127550965
Entry
127550965         CDS       T08818                                 
Name
(RefSeq) retinoic acid receptor RXR-alpha isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
afz  Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03320  PPAR signaling pathway
afz04148  Efferocytosis
afz04151  PI3K-Akt signaling pathway
afz04659  Th17 cell differentiation
afz04919  Thyroid hormone signaling pathway
afz04920  Adipocytokine signaling pathway
afz04928  Parathyroid hormone synthesis, secretion and action
afz04932  Non-alcoholic fatty liver disease
afz04976  Bile secretion
afz05160  Hepatitis C
afz05200  Pathways in cancer
afz05202  Transcriptional misregulation in cancer
afz05207  Chemical carcinogenesis - receptor activation
afz05216  Thyroid cancer
afz05222  Small cell lung cancer
afz05223  Non-small cell lung cancer
afz05226  Gastric cancer
afz05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:afz00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    127550965
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    127550965
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    127550965
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    127550965
   03320 PPAR signaling pathway
    127550965
   04919 Thyroid hormone signaling pathway
    127550965
   04928 Parathyroid hormone synthesis, secretion and action
    127550965
  09154 Digestive system
   04976 Bile secretion
    127550965
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    127550965
   05202 Transcriptional misregulation in cancer
    127550965
   05207 Chemical carcinogenesis - receptor activation
    127550965
  09162 Cancer: specific types
   05226 Gastric cancer
    127550965
   05216 Thyroid cancer
    127550965
   05222 Small cell lung cancer
    127550965
   05223 Non-small cell lung cancer
    127550965
  09172 Infectious disease: viral
   05160 Hepatitis C
    127550965
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    127550965
  09167 Endocrine and metabolic disease
   04932 Non-alcoholic fatty liver disease
    127550965
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:afz03000]
    127550965
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:afz03310]
    127550965
Transcription factors [BR:afz03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    127550965
Nuclear receptors [BR:afz03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   127550965
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 127550965
NCBI-ProteinID: XP_051836256
LinkDB
Position
2:506611367..507026251
AA seq 484 aa
MLSVRPYLDQVLLKENMDSFCLGFGLDFSTQVNSTSLNSPTGRGSMAAPSLHPSIGPGLG
SSLGSSSQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQLNSPM
NPVSSTEDIKPPLGLNGVLKVPAHPSGTMASFTKHICAICGDRSSGKHYGVYSCEGCKGF
FKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNEN
EVESTSSANEDMPVEKILEAELAVEPKTETYIEANMGLNPNSPNDPVTNICQAADKQLFT
LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH
SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYA
SLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP
HQMT
NT seq 1455 nt   +upstreamnt  +downstreamnt
atgctgtctgttcgtccgtacctggaccaggtgctcctgaaggaaaatatggatagcttc
tgtcttggctttggactggatttttccacccaggtcaattctacatccctgaattccccc
actggcagagggtccatggctgccccctccctgcacccgtccattggccctggccttggc
tcgtccctcggatcatccagccagctgcactcccccatcagcaccctgagctcccccatt
aatggcatgggccctcccttctctgtcatcagctcccccatggggcctcactcaatgtct
gttcccacaacccctacccttgggtttgggaccggcagtccccagctcaactctccaatg
aaccctgtcagcagcacagaagatattaagccacctcttgggctcaatggggttcttaaa
gtgcccgcccatccctcaggaaccatggcctccttcaccaagcacatatgtgccatctgt
ggggaccgctcctcaggtaaacattatggtgtgtacagttgtgaaggctgcaaaggcttc
ttcaagaggacggtccgcaaggacctcacctacacctgccgagataataaggactgcctg
attgacaaacgccagcggaaccgttgccaatattgccgctaccagaagtgtcttgccatg
ggcatgaagcgagaagctgtgcaagaagagaggcagaggggcaaagaccggaatgagaac
gaggtggaatcaaccagtagtgctaatgaggacatgccagtggaaaagatcttggaagct
gaacttgctgtggagccaaagacagagacgtacattgaggcaaacatgggactgaatccc
aattcacccaacgaccccgttaccaacatttgccaagcagcagacaaacagctcttcacc
ttggtggaatgggccaagagaatcccccacttctcagagctacccctggatgaccaggtc
attctattgcgagcaggctggaatgagctgctcatcgcctcgttctctcaccgctcgata
gcagtgaaagatgggatccttcttgccaccggcctccacgtccataggaacagcgctcac
agtgcaggggtgggcgccatctttgacagagtcctgacagaacttgtatcgaaaatgcga
gacatgcagatggacaagacagagctgggctgcctgagagccattgtcctcttcaaccct
gactctaaaggactttccaaccctgcggaagtagaagccctacgagagaaagtttacgct
tccctcgaggcctactgcaaacacaagtatcctgaccagcctggaaggttcgccaagctc
ttgctccgtctcccagctctccggtccattggcctgaaatgcttggagcacctcttcttc
ttcaagctaataggagatacccccattgacaccttcctgatggagatgttggaggcaccc
caccaaatgacatag

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