Antechinus flavipes (yellow-footed antechinus): 127553302
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Entry
127553302 CDS
T08818
Name
(RefSeq) exosome complex exonuclease RRP44 isoform X1
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127553302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afz03019
]
127553302
Messenger RNA biogenesis [BR:
afz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
127553302
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
OB_HELZ2
Get2_like
Toxin_R_bind_C
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
127553302
NCBI-ProteinID:
XP_051839870
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All DBs
Position
3:complement(117036538..117075575)
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AA seq
959 aa
AA seq
DB search
MLKSRTFLKKTRAGGVLKIVREHYLRDDIGCGASGCTECCSAQEGPALEPRPRDPESSLC
PQPHYLLPDTNVLLHQIDILEDPVIRNVILLQTVLQEVRNRSAPVYKRIRDLISDLSKHF
YTFTNEHHRETYIEQKQGENANDRNDRAIRVAAKWYNEHMKKITTDENHPQVIFITNDIK
NKEKAIEEGIPAYTCEEYIKSLTANPELVDRLACLSDEGNEIESRKVLFPEHLPLSKLQQ
GIKSGTYLQGTFRASRENYLEATVWIHGDDEENREIIIQGLKNLNRAVHEDIVAVELLPR
SQWVAPSSVVLQDEGQNGDDVEDEEEKENTLNTAINVKMLRPSGRVVGIIKRNWRPFCGM
LSKSDIKESRRHLFTPADKRIPRIRIETRQASTLEGQRIIVAIDGWPKNSRYPNGHFVKN
LGAVGDKETETEVLLLEHDVPHQPFSQAVLGFLPKMPWSITEEDMKNREDLRHLCVCSVD
PPKCTDIDDALHCRELENGNLEVGVHIADVSHFIRPGNALDQESAKRGTTVYLCEKRIDM
VPELLSSNLCSLRSNVDRLAFSCIWEMNHNAEILKTRFTKSAINSKASLTYAEAQMRIDS
ATMNDDITTSLRGLNKLAKILKRRRIDAGALILSSPEVRFHVDSETHDPIDLQTKELRET
NSMVEEFMLLANVSVAKKIHEEFSEHALLRKHPAPPPSNYEVLVKAAKSKNLDFKTDSAK
ALADSLDQVESPNFPYLNTLFRILATRCMMQAVYFCSGMDNDFHHYGLASPIYTHFTSPI
RRYADIIVHRLLAVAIGADSTYPDLTNKHKLADLCKNLNFRHKMAQYAQRASVAFHTQLF
FKNKGIVNEEAYILFVRKNAIVVLIPKYGLEGTVFFEEKDKSKPRLAYDEEVPSLKVEDT
EFHIFDKVKVKITLDSSNLQHQKIRMSLIEPQIPGISIPIDSPNSNTDEPEKKRSKLEN
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgctcaaatcccgaacgttcttgaagaagacccgggcgggcggagtgctgaagatagtg
cgggagcattatctacgcgacgacatcggttgcggggcttcgggctgcaccgagtgctgc
agtgcccaggaagggccggccctcgagcctcggccacgcgaccccgagagcagcctctgc
ccacagccccactaccttctgccggacaccaacgtgctgctccaccagattgatatactt
gaggatccagttatcagaaatgtaatcctgctacaaacagttctccaggaagtaaggaat
cggagtgcaccagtatataagagaatccgagatttgattagtgatcttagcaagcatttc
tataccttcactaatgagcatcatagagaaacatatatagaacaaaaacaaggggaaaat
gcgaatgatcgtaatgatagagcaatccgagtagcagcaaaatggtacaatgaacacatg
aagaaaattacaacagatgagaatcatcctcaagttatcttcataacaaatgacataaaa
aataaagagaaggcaatagaagagggaataccagcttatacatgtgaagaatacataaaa
agcttaacggcaaatcctgaacttgtagatcgtcttgcttgtctatctgatgaagggaat
gaaatagaaagtcggaaagtattatttccagagcatcttcctttaagtaaattacagcaa
ggcataaaatctggtacttaccttcaaggaacattcagagcaagtagagagaattatctt
gaagccacagtgtggattcatggagatgatgaagaaaacagagagattatcatccaagga
cttaaaaacttgaaccgggctgttcatgaggacatagtagctgtggaacttttgcccaga
agtcagtgggtagcaccatcttctgtggtcctgcaagatgaaggtcaaaatggtgatgat
gtagaagacgaagaggaaaaagaaaacactctgaacactgctataaatgtgaaaatgtta
aggccttcaggaagagtggtaggaataataaaaaggaactggaggccattttgtggcatg
ctttccaaatctgatattaaggagtcaagaagacatctctttacacctgctgacaagaga
atacctcggattcgaatagaaacaagacaagcttcaaccttagaaggacagagaattatt
gttgctattgatggttggcccaagaattctagataccctaatggtcattttgtaaaaaat
ttaggtgctgttggtgataaagagactgaaaccgaagttttgctccttgaacatgatgtt
ccccatcagcctttctcccaagctgttcttggttttctgccaaagatgccctggagcatc
actgaagaggacatgaaaaatagagaagacctgagacatctttgtgtttgtagtgtggat
cctccaaagtgtacagatatcgatgatgctttacattgtcgagaacttgaaaatggaaat
ctagaggttggcgttcacattgcagatgttagccactttattcgaccaggaaatgctttg
gatcaagagtcagctaaaagaggaacaactgtctatctttgtgaaaaaagaattgacatg
gttccagaattgcttagctctaatttatgttctttaagatcgaatgtggacaggctagca
ttttcatgtatttgggaaatgaatcacaatgctgaaattttaaaaacaagatttaccaaa
agtgccattaattcaaaggcttcccttacatatgcagaagctcaaatgagaattgattca
gcaaccatgaatgatgatattaccaccagtctccgtggactaaataaactagcaaaaatt
ctgaagaggcggagaatagatgcaggggctttgatactttcttctcctgaagttcgattt
catgtggatagtgaaactcatgacccaatagatcttcagacaaaagaacttagagaaaca
aattccatggtagaagagtttatgttacttgccaatgtctcggttgcaaagaaaatccat
gaagaattttctgaacatgccctgcttagaaaacatcctgctcctcctccatcaaattat
gaagtccttgtgaaggcggctaaatccaaaaatttggattttaagactgattcagcaaag
gctttggctgactctttagaccaagtggagtctcctaatttcccatatctaaacacactc
ttcagaatattagccactcgctgtatgatgcaagcagtttatttctgttctggaatggat
aatgattttcatcattatggcttagcatcaccaatatacacacattttacttcacccatc
agaagatatgcagatataatcgtacatcggcttttggcagtagctataggagcagactct
acttacccagatctgacaaataaacacaagctagcagatttgtgcaaaaatctcaatttc
cgacacaaaatggcacagtatgcacaacgggcatctgtcgcatttcatacacagctgttc
ttcaaaaataaaggaatagtgaacgaagaagcctatattttgtttgtaagaaaaaatgct
attgtagtgttaattccaaaatatggtttagaaggaactgtattttttgaggaaaaagac
aaatcaaaaccaagacttgcttatgatgaggaggtgccctcactaaaggtagaagacaca
gaatttcatatttttgataaagttaaagtgaaaatcaccttagactcatccaatcttcag
catcagaaaattcgtatgtctctgatagaaccacagataccaggaataagcattcctatt
gattctccgaactcaaacactgatgaaccagaaaaaaagaggagcaagctagaaaattag
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