Antechinus flavipes (yellow-footed antechinus): 127553467
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Entry
127553467 CDS
T08818
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz04151
PI3K-Akt signaling pathway
afz04510
Focal adhesion
afz04512
ECM-receptor interaction
afz04820
Cytoskeleton in muscle cells
afz04926
Relaxin signaling pathway
afz04933
AGE-RAGE signaling pathway in diabetic complications
afz04974
Protein digestion and absorption
afz05146
Amoebiasis
afz05165
Human papillomavirus infection
afz05200
Pathways in cancer
afz05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
127553467
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127553467
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127553467
09142 Cell motility
04820 Cytoskeleton in muscle cells
127553467
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
127553467
09154 Digestive system
04974 Protein digestion and absorption
127553467
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
127553467
09162 Cancer: specific types
05222 Small cell lung cancer
127553467
09172 Infectious disease: viral
05165 Human papillomavirus infection
127553467
09174 Infectious disease: parasitic
05146 Amoebiasis
127553467
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
127553467
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
afz04147
]
127553467
00536 Glycosaminoglycan binding proteins [BR:
afz00536
]
127553467
Exosome [BR:
afz04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127553467
Glycosaminoglycan binding proteins [BR:
afz00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127553467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
127553467
NCBI-ProteinID:
XP_051840144
LinkDB
All DBs
Position
3:167582811..167857044
Genome browser
AA seq
1704 aa
AA seq
DB search
MGSRMYPTSRLALQRCLLLFMLITVLTERAHAGVKKYDVPCGGRDCSGGCQCYPEKGARG
QPGQVGPQGYDGPPGLQGIPGLQGRKGDKGERGAPGITGPKGDVGQRGVSGFPGADGIPG
HPGQGGPRGRPGSDGCNGTTGDAGTQGPPGSGGLPGLPGPQGPKGQKGEPYAFSQAERDK
YRGDSGEPGFIGLPGPSGYPGSPGKIGPVGAPGRPGPPGPPGPKGQPGNRGLGFYGEKGE
KGDVGRPGPTGLPPDSDLATSFLENVVDQLDQYKGEKGNWGEPGWKGISEKGEEGIVGFP
GQRGLPGNNGREGDQGEKGMRGDVGFPGIDGFKGLPGDIGDRGPPGPPSYSPHPSLIKGI
RGEPGDTGAYGPPGNPGAQGDPGQPGPRGTTIGDGDERRGLPGEMGAKGFMGDPGIPALY
PGPPGIDGKPGLPGLPGPSGPPGPDGFLFGLKGAEGNVGYPGPSGIPGTRGQKGWKGDPG
DCKCDIPSGLPGPPGPIGRPGANGEPGRKGEIGDPGAHGIPGFPGFKGNPGIPGLPGIKG
QKGDSRTITTKGSRGDQGNPGMPGLQGEDGFPGRDGLDGFPGLPGLPGDGIKGLPGDSGF
PGVPGLKGIPGESGPPGLGLPGPKGERGFPGDPGLSGSPGFPGPPGPPGTPGQTDCDGGV
KEPIGQEIIRPGCVIPPKGSQGLPGLPGSPGAKGQRGLPGLPGVDGFIGLKGFQGDAGRE
GFPGPPGFVGPRGSKGATGLPGLDGSPGSSGLPGSVGPAGQKGLPGEVLGAQTGLPGDPG
LPGIPGLKGEQGNRGPQGFRGSPGMPGMPGLKGQPGFPGPSGQPGLPGPPGTHGFPGPQG
QAGLPGFPGPSGFPGLPGDRGDRGDIGVPGPVGMKGLDGDRGDTGFIGEQGRRGEPGFQG
IPGLPGIPGTKGFKGSPGMEGFKGMLGIKGRSGTIGYKGEVGDFGIPGLKGLTGEPGLKG
SRGEPGPPGAPPKVLPGMKDFKGEKGDEGPVGGKGYWGIKGGQGMPGIPGQAGIPGLPGR
PGHIKGAKGEIGVPGVPGLQGFPGVIGSPGIRGFPGFVGVRGDKGMPGREGLYGETGSIG
DSGDEGDTINLPGRPGLKGEVGTSGLAGEKGFTGEKGTLGDHGFTGLMGIKGSQGLPGLK
GQTGFPGLTGLQGPQGDPGRAGPPGEKGDQGWPGSPGSSGFPGIRGISGLHGLPGTKGFP
GSPGTDGYGNPGFPGLFGDKGERGEPNTIPGPLGAPGQKGERGTIGEQGPSGSPGPQGLP
GFTAPSNISGLPGDKGSPGLFGPQGYRGLPGAPGPASFPGIKGEVGSPGFTGERGPKGWP
GDPGPQGRPGVYGLPGEKGPKGQQGVMGYHGIPGSIGDRGPKGPKGDRGFPGIPGAMGSP
GIPGVPLRIATEPGVAGPHGKRGPPGMQGEMGPQGPPGDPGLRGLPGIPGPQGRGGMSAL
PGFRGDEGPMGHQGPVGQEGERGRPGSPGLPGMPGRSVSIGYLLVKHSQTDQEPMCPVGM
NKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDICHYASRNDKSYWLS
TTAPLPMMPVAEDEIKPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMH
TAAGDEGGGQSLVSPGSCLEDFRATPFIECNGGRGTCHYFANKYSFWLTTIPEQNFQASP
SADTLKAGLIRTHISRCQVCMKNL
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atgggcagcagaatgtatccaacttccagacttgcccttcaacgatgtctgctgctgttc
atgctgatcacggtgctaactgagagggcacatgctggtgtgaaaaaatatgatgtgcct
tgtggtggaagagactgcagtggaggttgtcaatgctatcctgagaaaggagcccggggt
caaccaggacaagttgggccacaagggtatgatggaccaccagggctacaaggtattcca
ggattacaaggacgcaaaggtgataaaggagaacggggagcaccaggaataacaggaccc
aaaggagatgtgggacaaagaggtgtttctggatttcctggagctgatggaattcctggt
catccaggtcaaggtggacctcggggaagaccaggcagtgatggttgtaatggaactact
ggagatgctggtacacagggacccccaggctctgggggtttacctgggctccctggacca
caaggacccaaaggtcagaaaggcgaaccttatgcattttctcaggctgaacgagataaa
tacaggggtgattcaggagaacctggttttattggtttaccgggaccttcaggttatcct
ggcagtccgggaaaaataggtcctgttggagcccctgggcgaccaggacctcctggacct
ccaggaccaaaaggacaaccaggcaacagaggtcttggcttttatggtgaaaagggtgaa
aagggtgatgttggacgaccaggacctactggacttccaccagatagtgatcttgctact
tcctttcttgaaaacgtggtggaccaactagatcaatataagggtgaaaaaggaaactgg
ggagaaccaggctggaaaggaatttcagaaaaaggtgaagaaggaatagtgggctttcca
ggacaacggggtttgccaggcaacaatggtagagaaggagatcaaggagagaaaggaatg
agaggagatgttggctttccaggaattgatggctttaaaggactaccgggagacataggt
gaccgaggtccccctggaccaccttcatattcaccccatccctctctaataaaaggcata
agaggtgaaccaggagatacaggggcttatggtccccctggaaatccaggtgcacaagga
gaccctggccaaccaggtccccgggggacaacaataggagacggagatgaacgaagaggc
cttccaggtgaaatgggagccaagggttttatgggtgatccaggaattccagccttgtac
ccaggacctccaggtatagatggaaaacccggacttccagggctacctggaccttctggc
ccaccaggaccagatggatttctttttggacttaagggagcagagggaaatgtgggttac
ccaggcccttcaggaatcccaggaacaagaggacaaaaaggatggaaaggtgatcctgga
gactgtaaatgtgatattcccagtggtcttcctggtccaccaggacccatcggtcgtcct
ggtgcaaatggagaaccagggaggaagggagaaattggtgatccaggtgcacatggtatt
cctggtttcccaggtttcaagggtaaccctggcattcctggattacctgggattaaagga
cagaaaggagactctagaacaattacaacaaaaggtagcagaggtgatcaaggcaatcct
ggcatgcctggtttgcaaggtgaagatggctttccaggacgagatggactagatggtttt
ccaggccttccaggtcttcctggtgatggcatcaaaggccttccaggagattcaggtttc
ccaggagtacctggtttaaaaggcattccaggagaaagtggtcctccaggcctaggtcta
cctggcccaaaaggtgaacgaggtttccctggtgaccctggattaagtggaagtcctggc
ttcccaggccctccaggccccccaggcactccaggccaaacagattgtgatggaggtgtg
aaagagccaattggccaggagataatccgacccggttgtgtaataccacctaaaggatct
caagggttgcctggactcccaggatctccaggtgcaaaaggtcaaagaggacttccagga
ttaccaggtgtagatggatttattggacttaaaggattccaaggagatgcaggtcgtgaa
ggatttccaggaccaccaggatttgttggacccagaggatccaaaggtgcaacagggctc
cctgggttggatggaagcccaggctcttcaggattaccaggttctgtaggaccagcagga
caaaaaggattacctggagaagtattaggtgcacagactggtctcccaggagatcctgga
ttgcctggaatcccaggattgaaaggagaacaaggaaataggggacctcaaggatttaga
ggaagcccaggtatgcctggaatgcctgggttgaaaggtcagcctggattcccaggtcct
tcaggtcaacctggattaccagggcctccaggaacacatggctttccaggacctcaaggc
caagcaggactaccaggttttccaggaccttcgggatttccaggtctacctggtgataga
ggtgatcgaggtgacataggagtccctggccctgtggggatgaaaggtctggatggtgat
agaggtgatactggttttataggagagcaaggcagacgaggagaacctggatttcaaggg
atacctggattgcctggcatcccaggaacaaaaggtttcaaaggatctcctggtatggaa
ggtttcaaaggcatgttgggcatcaaaggaagatcaggaaccattggatataaaggagag
gttggtgattttggaattcctggtttgaaaggtctaactggtgaaccaggcttgaaaggt
agccgtggagaaccaggacctccaggagcacctccaaaagttctgccaggaatgaaagac
ttcaaaggagaaaaaggagatgaaggacctgttggagggaagggatattggggcataaaa
ggtggacaaggaatgccaggcattcctggacaggcaggaattcctgggttacctggaaga
cctggtcacatcaaaggggccaaaggtgaaatcggtgttcctggagtgcctggtttgcaa
ggattccctggtgtaattggttctcctggtatcagaggttttcctggatttgtaggtgtt
aggggtgacaaaggtatgcctggacgagaaggtctttatggtgagactggaagtatagga
gattctggtgatgaaggagacactataaatttaccgggaaggccagggttaaagggagaa
gtgggcacatctggacttgcaggtgaaaagggattcactggagaaaaaggcacactagga
gatcatggtttcacaggactgatgggcataaaaggatctcaaggccttcctggactgaaa
ggacagacaggttttccaggactgacaggactccaaggaccccaaggagacccaggtcgt
gctggacctcctggtgaaaagggagatcaaggatggccagggagtccaggctcatcaggt
ttccccggcatcagaggaatcagtggattacatggcttaccaggcactaaaggcttccct
ggatctccaggtacagatggctatgggaatcctggctttcctggtctttttggtgacaaa
ggagaaagaggagagcccaacacaattcctggccccctgggagcaccaggacagaaagga
gaaaggggaaccataggggaacaaggcccatctggtagcccaggacctcaaggacttcca
ggattcactgcaccttccaatatctctgggttaccaggtgacaaaggatccccaggttta
tttggaccacagggttaccgaggcctcccgggagcacctggaccagcatctttccctgga
atcaaaggagaagtaggaagtccaggatttacaggagaaaggggacccaaaggatggcca
ggagatcccggaccccagggtagacctggagtatatggactcccaggagaaaaaggaccc
aaaggacaacaaggagtcatgggataccatgggataccaggaagtattggtgacagaggc
cccaagggacctaaaggagatagaggattccctggcattcctggtgctatgggatctcct
gggattccaggagtccccctgaggattgctacagagcctggggtggcaggtccccatggc
aagagagggccccctggaatgcaaggagagatgggtccccagggtcctccaggtgatcca
ggcttgcgaggactgcctggaattccaggtccccaaggaagaggtggtatgtcagccctt
ccaggattcagaggtgatgaaggtcccatgggtcatcaaggaccagtaggccaagaaggt
gaacgaggccgaccaggaagtcctgggctacctggaatgccaggccgtagtgttagcatt
ggttatctcctggtgaaacacagtcagactgatcaagagccaatgtgtccagttggcatg
aataaactctggagtggatatagtctattatactttgaaggccaggaaaaagcccacaac
caagatcttggactggctggctcgtgcttggcccgtttcagcaccatgcctttcctgtac
tgcaatcctggagacatctgccattatgccagccggaacgacaaatcctactggctctca
acaactgcaccactgcccatgatgccggtggcagaagacgaaattaaaccttatatcagc
cgttgctctgtatgcgaagcccccgccgtggccattgctgtccatagccaagatgtctcc
atcccccactgtcctgcagggtggcgcagcctgtggattggctactcctttctcatgcac
accgccgccggggatgagggcggcggacagtcgctggtatctcccggaagctgtctggag
gacttccgggccacgccttttatcgaatgcaacggaggccgaggaacctgccactacttt
gccaacaagtacagcttttggctcaccaccattcccgagcagaacttccaggcctccccc
tcggcggataccctgaaggcggggctcatccgaactcacatcagtcgctgccaggtctgc
atgaagaacctctaa
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