Antechinus flavipes (yellow-footed antechinus): 127555131
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Entry
127555131 CDS
T08818
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127555131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afz03021
]
127555131
03019 Messenger RNA biogenesis [BR:
afz03019
]
127555131
Transcription machinery [BR:
afz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127555131
Messenger RNA biogenesis [BR:
afz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
127555131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
127555131
NCBI-ProteinID:
XP_051843176
LinkDB
All DBs
Position
3:530553837..530583487
Genome browser
AA seq
1614 aa
AA seq
DB search
MYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDDIFPLKKLYA
LDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPPTPSTVVSSPGISTPPIVPD
IQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQGASNIVPGSAP
SKLLVSQIPPMAVKASHQVSVQPEKSRPSSSSQLQDMKVTNRDPRLNRISQHSSHGKEQS
HRKDFLVNAMNQSDIKANKSMPADKQNSSKQEKSKSSEKITKKELDQLDTKSKSKSPSPL
KNKFSHTKDIKNQESESGRGVPEMSKRDPRLKKHLQDKPDSKDDDLKEKRKSSEKKDKEE
HVKSSEHRLTGGRNKIINGIVQKQDAGTEESEKQGTKTGRSSTRKRSRSRSPKSRSPITH
SPKRRDRRSPKRRQRSISPSTSTPKTGKLRQSGVKQSHVEEFAQASRDERNSNKRSTKQD
TRDPRRVKKTQEERPQETLNQHSTKSGSEPKENVENWQSSKSTKRWKSGWEENKSLQQGE
EHQGLGKSPHLRHRESWGSAKGILSSRAPKQQHRLSVDANLQIPKELTSASKRELLKKAN
DSLTSGEITQDEFLVVVHQIRQLFQYQEGKHRCNVWDSPTEENKGGLKKKPLLSDAELTY
YEHKAKLKRTQVQHSFPRLDLLDPDIFDYHLTDALLSGIECEPSKSKHTGRSSGAQFDRK
EQFSERSRRLSPISGSRTYAENLSPHDGRRRHEEQVSAKGVREEQRSPFSERFALKRPRY
EDSDKTFADSPASRYSSLDTTNQRLTALAEDRPLFDGPSRPSVARGDGPTKMIFEGPNKP
NPRIDGPPTPASLRFEGSPGQIGGGGPMRFEGPQGQLGGGCPLRFEGPQGPGGTPLRFEG
PLGQAGGGGLRFEGAAGLRFEGPTGGLRFEGPAGQNVGGLRYEGPRGQPVGGLRFEGPHG
QPVGALRFENPRGQPVGGLRFEGSHGASGSGIRFEGPHGQPGGGIRFEGPLLQQGGGMRF
EGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGVRFEGPLVQQGSGMRFEGPSVQGG
SMRFEGPLGQGGPRFEGCHASRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQQGPQRFD
GPPGQQVQPRFDTGPQRFDGPQHQQASRFDIPLGLQGARFDNHPSQRLDAVSFSQTGPYN
DPPNSAFNAPSQGIQFQRHEQMFDTPQGPNFNGPHGPGAQNFSNPLNRASGHYFDEKNLQ
GPQFGNFSNLPTPIAVGNIQPSQQPVAFGQGQQFLPVHPQNPGTFVQNPAGALPRAYPDN
HLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVATQPPPEEEEEDQSEDQDVPDLTNF
TVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTH
RRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVE
SCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVEN
PLNIMLNIVKKELQEPCDSSKVKEEPVDITPACTDDSIDTPTEIKTEPDTVESV
NT seq
4845 nt
NT seq
+upstream
nt +downstream
nt
atgtatcttatggattccattgtgaagaacgttggaagagagtatcttactgcctttact
aaaaacctagttgcaacatttatttgtgtgtttgaaaaggtggatgaaaatactaggaaa
agtttatttaaattacgttccacatgggatgacattttccctttgaagaaactctatgcc
ttggatgtcagagttaattcattagatcctgcttggccaattaagcctctaccccccaat
gtgaatacttctagcatccatgtgaatcctaaatttttaaataaatcgcctgaagagcct
cctacacctagtacggtggtcagttcccctggtatctccacgcctccaattgtccctgat
atccaaaagaatttgactcaagagcaactgataaggcaacagctgctggcaaagcaaaaa
cagttgttagaacttcaacagaaaaaattggagctggagctggaacaaactaaggcacaa
ttggcagtttctcttagtgttcagcaaggggcatctaacatagttcctggatcagcacct
tccaaattacttgtttcacaaattccacctatggcagttaaagcttctcatcaggtttct
gtacagcctgaaaagagtcgtccttcctcctcttcacagctccaggatatgaaagtaaca
aatagagatcctcgtcttaatcggattagccaacattcttctcatggtaaagagcaaagt
cacaggaaagactttctagtaaatgcaatgaatcagtctgatatcaaggcaaataaatct
atgcctgctgataaacaaaactcatcaaagcaagaaaaaagtaaatcaagtgaaaaaatc
acaaagaaagaacttgaccaattagatactaaatccaaatctaaatctccttcacctttg
aaaaacaaattttctcacacaaaagatataaaaaatcaggaatctgaaagtggtcgaggg
gtccctgaaatgagcaagagagatccccgattaaaaaaacacctccaggataaacctgat
agcaaagatgatgacttaaaagagaagagaaaatcttcagaaaaaaaagataaagaggag
catgtgaagtcatctgaacacagactcactggaggtagaaataaaattataaatggtatt
gtacagaaacaagatgctggtactgaagaatcagaaaaacaggggacaaaaacaggaaga
tcaagtactagaaaacgatcgcgatcacgatctcctaagtctcggtcaccaatcacgcat
tctccaaaaaggagagataggcgctcacctaaacgaaggcaaaggagcatttctccttct
acttctacacctaaaactggaaagctacgccaatcaggagttaagcagtcacatgtagaa
gaatttgcacaagcttctcgtgatgaaagaaattctaataaaagaagtactaagcaggac
acccgggatcctaggcgagtaaaaaagactcaggaagagagaccacaagaaactctaaat
cagcattctacaaaatcaggatctgaaccaaaggaaaatgtagaaaattggcaaagctct
aagtctacaaaaagatggaaatctggttgggaggaaaataaaagtttacagcagggtgaa
gagcatcaaggacttggtaaatcacctcatctaaggcatagagagagttggggaagtgct
aaaggaattttatcatcccgagcccccaaacaacaacatcgattaagtgtagatgccaat
cttcagattcctaaagaattaacttctgcaagcaagagagaattacttaaaaaggcaaat
gatagtttaacatctggtgaaattacacaggatgaattccttgttgttgttcatcagatt
cgtcagctctttcagtatcaagaaggaaaacatagatgcaatgtatgggatagtcctaca
gaagaaaataaaggtggattaaaaaagaaacctctcttatctgatgctgaattaacatat
tatgagcataaagctaaactcaaaaggacacaggttcagcattcatttccaagacttgat
ctcttagatcctgatatatttgattaccatttgactgatgctttgttgtctggaatagaa
tgtgaaccatccaaaagtaaacatacaggtaggagtagtggagcacagtttgacagaaaa
gaacaatttagtgaaagatcaaggcgtctttctccaatatctggaagccgtacttatgcg
gagaatctttccccccatgatggtcgaagaaggcatgaagaacaagtttctgccaaaggt
gtccgagaagagcaaagatctccattcagtgagcgttttgcacttaagagacctagatat
gaagattcagataaaacatttgcagacagcccagcatcaagatattcaagcctcgataca
acaaatcagagactcacagcattagctgaagatagaccattatttgatggaccttctagg
ccatctgtagcaaggggagatggcccaactaaaatgatttttgaaggacctaataagcca
aaccctagaattgatggacctccaacaccagcttctcttcggtttgaagggtcaccagga
caaatagggggaggggggcccatgaggtttgaaggaccacaaggtcagctaggaggtggg
tgtcctttgagatttgaaggtcctcaaggaccaggagggactcctctgaggtttgaaggg
cctcttggacaggcaggaggaggtggcttaagatttgaaggagctgctggtttgcggttt
gagggtcccacaggtggtttgaggtttgaaggcccagctggccagaatgtgggtggactt
aggtatgaaggtccccgtggtcagcctgtgggtggtcttagatttgagggacctcatggt
cagcctgtaggtgctctaaggtttgagaatcctcgaggtcagcctgtaggtggactcaga
tttgaggggagccatggtgcatcaggaagtggaattaggtttgagggaccccatggtcag
ccaggtggtggaatcagatttgaaggccctttgctccagcaaggtggtggtatgagattt
gagggaccccatggccagtcagtggcaggtctaagatttgaaggacaacataatcagctt
ggtggaaaccttcgatttgaaggaccacatggtcagccaggggttggggtcagatttgaa
ggacccttagtccaacagggaagtggaatgagatttgagggtccttctgtacaaggaggt
agtatgagatttgaaggaccattaggtcaaggtggtccaagatttgaggggtgtcatgct
tcaagatttgatggtcagccaggtcaaccatctctcttgccaagatttgatggcttgcat
ggtcagcctggtcctaggtttgaaagaactcctggtcaacagggcccacaaaggtttgat
gggccacctggtcagcaggtacaaccaagatttgatacagggcctcagagatttgatggc
ccacaacaccagcaagcatcaagatttgatattcctcttggtcttcaaggtgcaaggttt
gacaatcatccttcacagagacttgatgcagtctcttttagtcagactggcccatataat
gaccctcctaacagtgcgtttaatgcgccatcgcaaggaatacagttccaaagacatgag
caaatgtttgatacacctcagggaccaaattttaatggaccacatggccctggagcgcaa
aatttctcgaatccacttaacagagcatctggacattattttgatgaaaagaatcttcag
ggtcctcagtttggaaactttagtaatctgcccacgccaattgcagttgggaatattcag
ccatctcagcagcctgtagcttttggacaaggacagcagtttttaccagttcatccacaa
aatcctggtacttttgttcagaatccagcaggtgctcttccaagagcatatcctgataat
catctcagccaggttgatgtgaatgaactcttctcaaaactgctaaaaacaggaatactt
aaattatcccaacctgattcagcaacaactcaagtaaatgaagttgcaacacagcctcct
cctgaggaagaagaagaagatcaaagtgaagatcaagatgttcctgacctcactaatttc
acagttgaagaattgaaacagcgttatgatagtgttataaatcgcctgtatactggtatc
cagtgttattcttgtggaatgaggtttacaacatcacagactgatgtctatgcagaccac
ttggactggcattaccgacaaaatagaactgaaaaggatgttagcagaaaagttacacat
aggaggtggtactatagtctaacggactggatagaatttgaggaaatagctgatttggag
gaacgtgcaaagagccagttttttgaaaaagtacatgaagaggttgtgttgaaaactcaa
gaagctgctaaagaaaaggagtttcagagcgtccctgctggaccagctggggcagttgag
agctgtgaaatatgtcaggaacaatttgaacaatactgggatgaagaggaagaggaatgg
catttaaaaaatgccatccgagtagatggaaagatttaccatccatcatgttatgaagat
tatcaaaatacatcttcatttgattgtacaccatctcccagcaagacacctgttgaaaat
cccttgaatattatgttgaacattgtcaaaaaagaattgcaggaaccttgtgacagttcc
aaagttaaagaagaaccagttgatatcacaccagcttgtacagatgacagcatagataca
cctactgaaattaaaacagaacctgatacagttgagtcagtttaa
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