Antechinus flavipes (yellow-footed antechinus): 127556291
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Entry
127556291 CDS
T08818
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03015
mRNA surveillance pathway
afz04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127556291
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
127556291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afz03021
]
127556291
03019 Messenger RNA biogenesis [BR:
afz03019
]
127556291
Transcription machinery [BR:
afz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127556291
Messenger RNA biogenesis [BR:
afz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
127556291
U7-dependent histone pre-mRNA processing factors
127556291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
CRM1_C
Cnd1
Motif
Other DBs
NCBI-GeneID:
127556291
NCBI-ProteinID:
XP_051845309
LinkDB
All DBs
Position
3:616561677..616583430
Genome browser
AA seq
1292 aa
AA seq
DB search
MAAAGEDLTGAMASGSGSGDSVTRRSVASQFFTQEEGSGVDGMTTSERVVDLLNQAALIA
NDSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL
LKLIANLNMLLRDESVNVVKKAILTMTQLYKVALQWMVKSKIISELQEACWDMMSAMATE
IILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEVPRRQKHDISLDRIPRDHPYINYNL
LWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPP
TLAKSQVSSVRKNLKLHLLSVLKHPASCEFQAQITTLLVDLGTPQAEIARNMPTGKEPRR
RQRDDPDSALKKMKLEPTLGEDDEDKDMEPGPSGTSKASAQSAAQSDTDITAEFLQPLLT
PDNVANLVLISMVYLPEAMPASFQAIYTPVESAGTDAQIKHLARLMATQMTAAGLGPGVE
QTKHSKEEPKEEKMSKPESVLIKRRVSVLGQGQAISVVGALSPVCTLEEEAPQAKRRPEP
IIPATQPRLAGVGGRKKIFRLSDVVKPMTDAQIESMKLGAVRRILRAEKSVACSGAAQVR
VKILARLVTQFEVGLKEEVLAFILEDIRGRLDLAFAWLYQEYNAYLAAGPTGTLDKYDAC
LIRLLSGLQEKPDQKDGIFTKVVLEAPLITESALEVVRKYCEDESRTYLGMSTLRDLIFK
RPARQFQYLHVLLDLSSHEKDKVRSQALHFIKHMYEKEQLRAYVEKFALNYLQLLVHPNP
PSVLFGADKDTEVAAPWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLR
VIEQPIRGMGMNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRL
PDVRFLIPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSAVSPLNPGEL
LIALHNIDSVKCDMKSIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQS
LTMYPRLGGFVMNILSRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLSAVF
DKCPELREPLLAHVRSFTPHQQAHIPNSIMAILEASSKQDSEVKEPLPASLEEEDLDAVA
QAPRPPQDLIALRLAQEKALKRQLEEEQKLKPLLPSASSARAGPPPAEEAMDFREEGTEG
EAPNIFISMEEDGGLTEATLLDSSQEGPLPEKVGRSPSSSPPQPKPKEEPAGVPSKEDRS
PQPPGPAREEAAPVPSPEAEGGEEASETKMDS
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggctggcgaggatctgactggagccatggccagtgggagtgggagtggggac
agcgtcacccgcaggagcgtagcctcccagttcttcactcaggaggagggcagcggcgtg
gatggcatgactacctcagagagggtggtagaccttctgaaccaggcggctctgattgca
aatgactcaaagatcacagtgctcaaacaggtccaggagctgatcataaataaggaccca
accttgttggataactttctggatgagatcatcgccttccaggcagacaaatcgatcgag
gtgcgcaagtttgtcatcggcttcatcgaggaggcctgcaaacgggacatcgagttgttg
ctgaagctgattgcaaacctgaacatgctgctgcgggatgagagtgtgaacgtggtgaag
aaggccatcctgaccatgactcagctctacaaggtcgccctgcagtggatggtgaaatcc
aagatcatcagtgagctgcaggaagcctgctgggacatgatgtcagccatggcgaccgaa
atcatcctcttgctggactcggataatgacgggatccgcacccatgccatcaaatttgtg
gaaggcctcatcgtcactctgtccccccgaatggctgactcagaggtgcctcgacggcag
aaacacgacatcagcctggaccgcatcccccgggaccacccctacatcaactacaatttg
ctctgggaggagggcaaggcagccctcgagcagctgctgaagttcatggtccacccagcg
atctcctccatcaacctgaccacggccctgggctccctggccaacatcgcccggcagcgg
cccatgttcatgtccgaggtgatccaggcctacgagaccttgcacgccaacctgccaccg
accctggccaagtcccaggtgagcagcgtgcggaaaaacctgaagttacacctgctcagt
gtcctcaagcacccagcgtcctgtgagttccaggcccagattaccacgctcctggtggac
ctgggcaccccccaggctgagatcgccagaaacatgcccacggggaaggaacctcgcaga
cggcagagagacgacccggactcggcccttaagaagatgaagctagagcccacgctcggt
gaggatgatgaagacaaagacatggagcccggcccctcggggacctcgaaagcctcagcc
cagagcgcggcccagtcggacactgacatcacggcggaattcctgcagcctttgctgacg
cccgacaacgtggccaacttggtgctcatcagcatggtgtacctcccggaggccatgcca
gcctccttccaggccatctacacgccggtggagtcggcaggcacggacgcccagatcaag
cacctggcccgcctcatggccacccagatgaccgcggccggcctggggccaggtgtggag
cagacgaagcactcaaaggaggagccgaaggaggagaagatgtccaagcccgagagcgtc
ctcatcaagcgacgcgtgtctgtgctgggccagggccaggccatttctgtggtgggggca
ctgagcccggtgtgcaccctggaggaggaggccccccaggccaagcggaggcccgagccc
atcatccccgccacacagccccggctggcaggtgtgggtgggcgcaagaagatcttccgc
ctgagtgatgtggtgaaacccatgacggacgcgcagatcgagagcatgaagctgggggcc
gtgagacgcatcctgagggccgagaagtcggtggcctgcagcggggcggcccaggtgcgg
gtgaagatcctcgcccggctggtgactcagttcgaggtgggcctgaaggaggaggtcctc
gccttcattctggaagatatccggggccgtctggacctggccttcgcctggctctaccag
gagtacaatgcctacctggccgccgggcccacggggaccctggacaagtacgacgcgtgc
ctcatccgcctgctctcgggcctgcaggagaagcctgaccagaaggacggaatcttcacc
aaggtggtgttggaggccccgctgatcacagagagcgccctggaagtggttcgcaaatac
tgtgaggatgagagccgcacctaccttgggatgtcgaccctccgtgacctgatcttcaag
cgcccggcgcgtcagttccagtacctgcacgtccttctggacctcagctcccatgagaag
gacaaggtgcgctcacaggccttgcacttcattaaacacatgtatgagaaagagcagctt
cgggcctacgtggagaagtttgccctcaactacctgcagcttctggtccatcccaacccg
ccctccgtgctcttcggggccgacaaggacacagaggtggcggccccttggacggaggag
acggtgaagcagtgtctctacctctacctggcgctgctgccccagaaccacaagctgatc
cacgagctggcggccgtctacaccgaggccattgctgacatcaagcggacggtcctgcgg
gtcatcgagcagccaatccgagggatgggcatgaactccccagagctgctcctgctggtg
gaaaactgccccaagggggccgagaccctggtcacccgctgccttcacagcctcacggac
aaagtgcccccctccccagagctggtgaaacgggtgcgggacctgtaccacaagcgcctg
ccggatgtccgcttcctcattcccgtgctcaatggcctggagaagaaggaagtgattcag
gccttacccaaactcatcaagctgaaccccatcgtggtgaaggaggtcttcaaccgcctg
ctgggcactcagcacggggaaggaaactcggcggtgtcgcccctgaatcccggggagctg
ctcatcgccctccacaacatcgattctgtgaaatgtgacatgaagtccatcatcaaggcc
acaaacctgtgctttgccgagcgcaacgtctacacctcggaggtgctggccgtggtcatg
cagcagctgatggagcagagccccctccccatgctgctcatgcgcaccgtcatccagtcc
ctcaccatgtatccccggctcggcggctttgtcatgaacatcctgtcccggctcatcatg
aagcaggtgtggaagtaccccaaggtatgggagggcttcatcaagtgctgtcagcggacc
aagccccagagtttccaagtgatcctgcagctgcccccccagcagctgagcgccgtcttt
gacaagtgtcctgagctccgggagcccctcctggcccatgtccgctctttcaccccgcac
cagcaagcccacatccccaactccatcatggccatcctggaagccagcagcaagcaagat
tccgaagtcaaggagcccctgcccgcgtccttggaggaggaggacctcgatgctgtggcc
caggccccgcgcccgccccaggatctcatcgccctgcgcctggcccaggagaaagccctg
aagcggcagctggaggaggagcagaagctgaagcccctgctgccctcggcctcctcggcc
cgggcgggtcccccacccgcagaggaggccatggattttcgggaggaggggaccgagggc
gaggcccccaacatcttcatcagtatggaggaggatggggggctgacggaggccaccctg
ctggactccagccaggaggggcccctacctgagaaggtagggcgttccccttcctcttcc
cctccacagccaaagccgaaggaggagccggcgggggtcccttccaaagaggaccggagc
ccgcagcctccaggccctgcccgggaggaggccgccccagtgcccagcccggaggcggaa
gggggggaggaggcttcggagaccaagatggacagctga
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integrated database retrieval system
