Antechinus flavipes (yellow-footed antechinus): 127556321
Help
Entry
127556321 CDS
T08818
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03022
Basal transcription factors
afz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127556321
09124 Replication and repair
03420 Nucleotide excision repair
127556321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afz03021
]
127556321
03036 Chromosome and associated proteins [BR:
afz03036
]
127556321
03400 DNA repair and recombination proteins [BR:
afz03400
]
127556321
Enzymes [BR:
afz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127556321
Transcription machinery [BR:
afz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127556321
Chromosome and associated proteins [BR:
afz03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
127556321
DNA repair and recombination proteins [BR:
afz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127556321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
Motif
Other DBs
NCBI-GeneID:
127556321
NCBI-ProteinID:
XP_051845355
LinkDB
All DBs
Position
3:616928719..616938375
Genome browser
AA seq
736 aa
AA seq
DB search
MLELKRTLDAKGHGVLEMPSGTGKTISLLALIVAYQRAHPLEVTKLIYCSRTVPEIEKVI
EELRKLMDSFEKQEGEKVPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA
QRQQDASVPHCQFYEEFDALGRQAPIPWGIYNLDDLKAFGRQKGWCPYFLARYSILHANV
IVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQNNLE
TLQRTVHKIKETDEKRLREEYRRLVEGLREASLARETDAHLANPVLPDEVLQEAVPGSIR
TAEHFLGFLRRLLEYVKWRLRTQHVVQESPPAFLGGLAHRVCIQRKPLRFCAERLRSLLH
TLEIADMADFSPLTLLSNFATLVSTYSRGFTIIIEPFDERTPTIANPVLHFSCMDASLAI
KPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMIVGRGNDQVAI
SSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVAAWYEQGILENIQRN
KLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVP
YVYTQSRILKARLEFLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMIFADKRF
ARADKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHREDQLGLSLLSLEQL
QSEETLRRIEQIAQQL
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgctggagctcaagcgcaccctggatgccaagggtcacggggtcctcgagatgccctcc
ggcaccggcaagaccatctccctcctggctttgatcgtggcgtaccaacgggcgcacccc
ctggaagtgaccaagctcatctattgctcccggaccgtgcccgagatcgagaaggtgatt
gaggagctgcggaagctcatggactccttcgagaagcaggagggtgagaaggtccccttc
ctgggcctggccttgagctcccgcaagaacctgtgtattcaccccgaggtgacccccttg
cggtttgggaaggacgtggacgggaagtgtcacagcctgacggcctcctacgtgcgggcc
cagcgccagcaggacgccagcgtccctcactgccagttctatgaggagtttgacgccctg
ggccggcaggcgcccatcccctggggcatctacaacctggacgacctgaaggcctttggg
cggcagaagggctggtgcccgtacttcctggcccgctactcaatcctgcacgccaacgtg
attgtctacagctaccactacctcctggaccccaagatcgccgacctggtctccaaagag
ctggcccgcaaggccgtggtggtctttgacgaggcgcacaacatcgacaacgtgtgcatc
gactccatgagcgtgaacctcacccgccgcaccctggaccgttgccagaacaacctggag
acgctgcagcgcacggtgcacaagatcaaggagacagatgagaagcgcctgcgggaggaa
taccgccgcctggtggagggcctgcgagaggccagcctggcccgcgagacggacgcccac
ctggccaaccccgtcctcccggacgaggtgctacaggaggccgtgcccggctccatccgc
acggcagagcacttcctgggcttcctgcggcgcctgctggagtacgtgaagtggcgtctg
cgcacccagcacgtggtgcaggagagcccgccggccttcctggggggcctggcccaccgc
gtctgcatccagcgcaagcccttgcggttctgcgccgagcggctgaggtccctgctgcac
acgctggagatcgcggacatggccgacttctcccccctcaccctcctctccaactttgcc
acgctggtcagcacctactcccgaggcttcaccatcatcatcgagccctttgacgagagg
accccaaccatcgccaaccccgtcctgcatttcagctgcatggacgcctccctggccatc
aagccagtgtttgagcgtttccagtctgtgatcatcacgtcagggacgctgtcgcccttg
gacatctaccccaagatactggacttccaccccgtcaccatggcgaccttcaccatgacc
ctcgcccgcgtctgcctctgccccatgatcgtcggccgaggcaatgaccaggtggccatc
agctccaagtttgagaccagggaggacatcgccgtgatccggaattacgggaacctgctc
ctggagatgtccgccgtggtccccgacgggatcgtcgccttctttaccagctaccagtac
atggagagcactgtggctgcctggtatgagcagggcatcctggagaacatccagcggaac
aagctcctgttcatcgagacccaggatggagccgagacgagcgtggccctggagaagtac
caggaggcctgcgagaacggccgaggggccatcctgctctccgtggccaggggcaaggtg
tctgagggcatcgacttcgtccaccactacggccgggccgtcatcatgttcggggtcccc
tacgtctacacccagagccggatcctcaaggcccgcctggagtttctccgtgaccagttc
cagatccgagagaatgacttcttgaccttcgatgccatgagacatgcggcccagtgtgtg
ggccgcgccatccggggcaagactgactatgggctcatgatctttgctgacaagcgcttt
gcgcgggctgacaagcgtgggaagctccctcgctggattcaagagcacctgaccgacgcc
aacctcaacctgaccgtggacgagggcgtccaagtggccaagtacttcctgaggcagatg
gcccagcccttccacagggaggaccagctgggcctgtccttgctgagcctggagcagctt
cagtcggaggagaccctgcggcgaatagagcagatcgcccagcagctgtga
DBGET
integrated database retrieval system
