Antechinus flavipes (yellow-footed antechinus): 127557445
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Entry
127557445 CDS
T08818
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127557445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afz03019
]
127557445
03041 Spliceosome [BR:
afz03041
]
127557445
03009 Ribosome biogenesis [BR:
afz03009
]
127557445
03016 Transfer RNA biogenesis [BR:
afz03016
]
127557445
Enzymes [BR:
afz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127557445
Messenger RNA biogenesis [BR:
afz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
127557445
Spliceosome [BR:
afz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127557445
Complex C
U4/U6.U5 tri-SnRNP related factors
127557445
Ribosome biogenesis [BR:
afz03009
]
Eukaryotic type
Pre-60S particles
Helicases
127557445
Transfer RNA biogenesis [BR:
afz03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
127557445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
127557445
NCBI-ProteinID:
XP_051846726
LinkDB
All DBs
Position
1:137969124..138057516
Genome browser
AA seq
1033 aa
AA seq
DB search
MADAFGDELFSVFEDESPAPGAKKGKGAAEVTGKAKKRTDDKPQSGSTNVGKNKRDLELE
STDEPIFGKKPRVENTLSEDVSLADLMPRVKVEAVETVEGCTHEVALPADEEYVPLKPRD
GKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTS
PIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWV
IFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYT
DYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTK
GPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTAEEKKMVEEVFNNAID
CLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGI
NMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVILMVDEKMSPTVGK
QLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKKLE
AQYNAIAIPNEESVVIYYKIRQQLAKLAKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDDF
GWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPAKPGEKGEMQVV
PVLVHLLSAISSVRLYIPRDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIQDQG
LKKVIQKVEAFEHRMYSHPLHNDSNLETVYKLCERKAQIAVDIKSAKRELKKARTVLQMD
ELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALL
SCFVFQENSTELPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLNTFKSNLMDV
VYTWATGCTFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITK
IKRDIVFAASLYL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgttcggggacgagctcttcagcgtgttcgaagacgagtcaccggctccc
ggtgctaagaaagggaaaggggcagccgaggtcacgggcaaggccaaaaaacggacagat
gataaaccacagtcaggatccaccaatgttggaaagaacaaaagagatttagaattggaa
agtacagatgaacccatatttggaaagaagcccagagtagaaaatacattatcagaagat
gtaagtttggcagatctcatgcccagagtcaaagtagaagcagtagaaactgttgaaggc
tgtacacatgaggttgcattacctgcagatgaagaatatgttccactgaagccacgagat
ggaaaagctgccaaagaatatccattcattcttgatgcttttcagagggaagccattcaa
tgtgtagataataaccaatctgttttagtttctgcacacacatcagctggaaaaactgta
tgtgctgagtatgccattgctttggctttgagagaaaagcagcgtgtgatatttaccagc
ccaattaaggctttaagtaatcagaaataccgtgaaatgtatgaagaatttcaagatgtt
ggcctgatgactggtgatgttaccataaatcctacagcatcttgcctagttatgactact
gagattttgagaagtatgctgtaccgagggtctgaagttatgagagaagttgcttgggtt
atatttgatgaaattcattatatgagagattcagagcgtggtgtggtatgggaagaaact
attattttgcttcctgataatgttcactatgtcttcctttctgctactattccaaatgct
cgacagtttgcagagtggatttgtcatttacataaacagccttgccatgtaatttacaca
gattatcgaccaactccattgcaacattatatttttccagcagggggagatggccttcat
cttgttgttgatgaaaatggtgatttcagagaagataatttcaataccgcaatgcaagta
cttagagatgcaggagatttggcaaaaggagatcagaaggggaggaaaggaggaacaaaa
ggaccgtcaaatgtatttaaaattgtgaagatgattatggaaagaaactttcagcctgta
attattttcagcttcagtaaaaaggactgtgaagcatatgccctccagatgaccaaatta
gatttcaacacagctgaagaaaagaagatggttgaagaagtatttaataatgcaattgac
tgtttatctgatgaagataaaaagcttcctcaggttgagcatgtgcttcctcttttgaag
agaggaattggtattcaccacggtggcttgcttcctattttgaaagagaccatagaaatt
ctattttcagaaggattgataaaggccttatttgcaacagaaacttttgctatgggaatt
aatatgccggctaggactgtgttgtttacaaatgctcgtaaatttgatgggaaagatttt
cgatggatttcttctggtgaatatattcaaatgtctggtcgagctggaagaagaggtatg
gatgagagaggaatagtaattctcatggtggatgaaaaaatgagcccaactgtaggaaaa
cagctactaaagggctcagctgatcctcttaatagtgcttttcacttgacctacaacatg
gttctgaacttgttgcgtgtagaagaaattaatccagagtatatgttggaaaaatccttt
tatcaatttcagcattatagagctattccaggagtagtagagaaggtaaagaaactagaa
gcacagtacaatgcaatagcaattcccaatgaagaaagtgtagtcatctactacaaaata
aggcagcaacttgccaaattggctaaagagattgaagagtatattcacaaaccaaagtac
tgtttgccatttttgcagccaggacgattggtgaaggtgaagaatgaaggggatgatttt
ggttggggagtagtggtgaatttctccaaaaaatcaaacgttaagcccaattctggtgaa
ttagatcctttatatgtcgtagaagtacttttacactgtagcaaagagagcttgaaaaat
tctgctactgaggctgctaagccagcaaaacctggtgagaaaggagagatgcaggtggtt
ccagtcctggtgcacctcctatctgctatcagcagtgttcgactttatattcccagagat
ctgaggccagttgacaatcgacagagtgtgctaaaatcaatacaggaagttcaaaaacgt
tttcctgatggtgttccattattagatcccattgatgatatgggcatacaagatcaagga
ctcaaaaaagtcatccagaaagtagaggcttttgaacatcgaatgtattctcatccactt
cataatgattcaaatttagaaaccgtttacaagctttgtgaaagaaaagcacagattgct
gtagatattaaatctgcaaagcgagaactaaagaaagcaagaacagtcttacaaatggat
gaacttaagtgtcggaaacgtgttttgagaaggctgggttttgctacatcttctgatgtc
atcgaaatgaaaggacgagtggcttgtgagatcagcagtgctgatgagctgcttttaact
gaaatgatgtttaatggacttttcaatgacctatctgcagagcaagctactgcattgcta
agctgttttgtatttcaggagaattccactgaattgcccaaattgacagaacaattagca
ggaccacttcgccagatgcaggaatgtgctaaaaggattgcaaaagtttcagcagaggcc
aaattagaaattgatgaagagacttacctaaacacattcaaatcaaacttaatggatgtg
gtctatacctgggcaactggatgtacatttgcccatatctgcaaaatgaccgatgtcttt
gaaggcagcataattcgttgtatgaggcgtctggaagaattgcttcggcagatgtgtcaa
gctgcaaaagctattggaaacactgagctggagaataaattcgcagaagggatcaccaaa
atcaagagagatatcgtgtttgctgcaagcctttacctgtaa
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