Antechinus flavipes (yellow-footed antechinus): 127559970
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Entry
127559970 CDS
T08818
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afz03019
]
127559970
Messenger RNA biogenesis [BR:
afz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
127559970
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
127559970
NCBI-ProteinID:
XP_051850106
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All DBs
Position
4
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AA seq
998 aa
AA seq
DB search
MAGPVSLRELLLGAAAGAGAASPAGSPAEGSGGGSGGGTGGAEPPWREDEICVVGIFGKT
ALRLSSEKFSLVNTVCDRQVFPLFRCQDPAEPGPGSGAEAGTVGEAGGAGDAGAGGGESA
RASAAAPETTKEDPTSQDYSLLQAYYNQESKVLYLLLTSICDNSQLLRACRALQSGEVGG
GLSSLPHAEAHEFWKHQEKLQCLSLLYLFSVCHILLLVHPTCSFDITYDRVFRALDGLRQ
KVLPLLKTAIKDCPVGKDWKLNCRPCPPRLLFLFQLNGALKVDPPRNQDPAHPDKPKKHS
PKRRLQHALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVPGGQEEDPVGMLLDQL
RSHCTVKDPESLLVPAPLSGPRRYQVMRQHSRQQLSFHIENSSSSSSSSGQLVDFTLREF
LWQHVELVLSKKGFDDSVGRNPQPSHFELPTYQKWIAAASKLYEVAIDGKEEDPASPTGE
ITSKILSSIKVLEGFLDIDTKFSENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQALR
VYSQHARGPAFHKYAMQLHEDCYKFWSNGHQLCEERSLTDQHCVHKFHSLPKSGEKPEAD
RNPPVLYHNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKCCGKLDHINFPIF
EPSTPDPAPAKNESSPAPPDTDAEKLKEKEPQTQGDSTSLSLALSLGQSTDSLGTYPADP
QAGGDNPEAHGQGEVKTEKRPNLVDRQASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLGP
AKSYNFHTGLDQQGFIPGTNYLMPWDIVIRTRSEDEGDLDTNSWPAPNKAVPGKRSSVVM
GRGRRRDDIARAFVGFEYEDSRGRRFMCSGPDKVMKVMGSGPKESAIKALNSDMPLYILS
SSQGRGLKPHYAQLMRLFIVVPDAPLQIILTPQVQPGPPPCPVFYPEKQEITLPPDGLWV
LRFPYAYVTDRGPCFPPKENVQLMSYKVIRGVLKAVTQ
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcccggtcagcctgcgggagctgctgctcggggcagcggccggggccggtgct
gcgagccccgcagggtcgccggcggagggcagcggcggcggcagcggcggcggaacgggt
ggggcggagccgccgtggcgggaggatgagatctgcgtggtgggaatcttcggcaagacg
gcgctgcgcctcagctccgagaagttctcgctggtgaacaccgtgtgcgaccggcaagtc
ttccccctgtttcgctgtcaggacccagcggaaccagggccagggtcgggcgccgaggcc
ggaaccgtgggggaggccggcggagctggggacgccggggctggcggcggggagtcggcg
cgggcgagcgcggcagcccccgaaacgaccaaggaggacccgacctcccaggactacagc
ctcctccaggcctactacaaccaagaaagcaaagtcctgtacctgctgctgacgtccatc
tgtgacaactcgcagctgctccgggcctgccgagccctgcagagcggagaggtgggaggg
ggcctctcgtctctgcctcacgccgaagcccacgagttctggaagcaccaagagaagctg
cagtgcctcagcctcctctacctcttctccgtctgtcacatcctgctcttggtccaccct
acctgctcctttgatatcacttacgaccgggtcttccgagctctggatgggttgaggcaa
aaggtgctgcccctcctcaagactgccatcaaggactgcccagtgggcaaggactggaag
ctaaactgccggccttgcccgcccagactcctctttctctttcaactcaacggggctctg
aaggtggaccctccccggaaccaagacccagcccatccagataaacccaagaagcactcc
cccaaaaggaggctccagcatgccctggaggaccagatctaccgcatttttcgcaagagt
cgagtcctgaccaatcagagtatcaactgcctcttcaccgttcctgccaaccaggctttt
gtgtacattgtccctggagggcaggaggaagacccagtgggcatgttgctggaccagctt
cggagccactgcactgtgaaagaccccgagtccctgttggtccccgcacccctctctgga
ccgaggcggtaccaagtgatgagacagcacagtcgtcaacagctttccttccacatagag
aacagcagcagctccagctcttcttcaggccagctcgtggatttcaccctccgagaattt
ctgtggcagcatgttgagctggtactgagcaagaaaggttttgatgacagtgtgggcagg
aatccgcagccttctcactttgaactccctacctatcagaagtggattgcagctgcttca
aaattatacgaagtagccattgatgggaaagaggaagatcccgcttctcccacaggagaa
attacctccaagattttaagcagtatcaaagttctggagggttttttggatattgataca
aagttctcagaaaaccggtgtcagaaagcattgcccatggctcacagtgcctaccagtcc
aatctgccccataattacacaatgactgtccataagaatcagcttgcccaggctcttcgg
gtctatagtcaacatgcccggggccccgcctttcacaaatatgccatgcagttgcatgaa
gactgctacaaattttggagcaatggccaccaactttgtgaggagaggagcttaacagat
caacactgtgtacataaatttcactcactacctaaatcaggagaaaagccggaagctgac
agaaatcctcctgtcttgtatcacaacagcagagctcggtccactggtgcctgtaactgt
ggaaggaaacaagcacctcgagacgacccctttgatatcaaagcagctaattatgacttt
tatcagcttctagaagaaaaatgttgtggaaaactggatcatatcaatttcccaatattt
gagccaagtacccctgatcctgctcctgccaaaaatgaatcatcacctgcccctccagat
acagatgctgaaaaacttaaagaaaaagaacctcaaacccaaggagacagcacaagtctg
agtttagcattgagtcttggtcagtccactgacagcttaggcacatatccagctgatcca
caagcaggaggagacaaccctgaagctcatggacaaggggaagtaaaaactgagaaacgt
ccaaatttggttgatcgtcaggcatccacagttgaatacctcccaggcatgctacattca
aattgtcctaaaggtcttttacccaaattttccagctggtctttggtcaaactaggccct
gctaagtcttataactttcacactggcttagaccaacagggtttcattccaggaacaaat
tatcttatgccttgggacattgtcatcaggacaagatctgaagatgaaggagacttagac
acaaactcttggccggctccaaataaggctgttcctggaaagagaagttcagttgtcatg
ggaagaggaaggcggcgagatgatatagctagagcttttgtgggatttgaatatgaagac
tctcgtggtcggagattcatgtgctctggccctgacaaagtgatgaaagtaatgggaagc
gggccaaaggaatctgcaatcaaagctctcaatagtgatatgcctttatatattctgtca
tcatctcagggtcgaggactaaaaccgcattatgctcaacttatgaggctttttattgtg
gttcctgatgctcctttacaaataatattaacgcctcaggttcaaccaggtccaccacct
tgtccagtattctaccctgagaagcaggaaatcacccttccacctgatggattgtgggta
ctacggttcccttatgcttatgtgactgatcgtggaccttgttttcctcccaaggaaaat
gtgcaattaatgagctacaaggtcatccgaggggttcttaaagcagttacacagtag
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