Antechinus flavipes (yellow-footed antechinus): 127560576
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Entry
127560576 CDS
T08818
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afz03019
]
127560576
Messenger RNA biogenesis [BR:
afz03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
127560576
3'-5' decay
Other 3'-5' decay factors
127560576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
UvrD-helicase
zf-CCCH
AAA_30
ResIII
PhoH
PAM2
zf_CCCH_4
AAA_22
zf-CCCH_4
Mov-10_helical
AAA_16
AAA_7
Bac_DnaA
Mg_chelatase
AAA_5
Motif
Other DBs
NCBI-GeneID:
127560576
NCBI-ProteinID:
XP_051851220
LinkDB
All DBs
Position
4:complement(160678505..160963207)
Genome browser
AA seq
1938 aa
AA seq
DB search
MADRRPEKSCEQACESLKRQDYEVAVRHCTEALLSLGQYSLANFTETCPSEIERIKIESL
LYRIASFLQLKNYGQADEDCRHVLGEGLAKGDGSFQAVLCCMHLKGKLQVVSNVLSKSLM
GESLNGMATKDLTRLKTLLTETETATSKVPSEYHVEDLEEGSRNGWHFRPPPRGITSSEE
YTLCKRFLEQGICRYGAQCTSAHSQEELSEWQKRYASRLIKLKQQKESKQFSGSYMETLI
EKWMNSLAPEKVLSECVEGVWVEHNPELSLTVTTKKSYQTWTFALTCKPARMLYRVALLY
DAHRPHFSIIGISAGDSTTQVSQEVPENCQEWIGGKMAQNGLDHYVYKIGIAFNTEIFGT
FRQTIVFDFGLEPVLMQRVMIDAASTEDLEYLMHARQQLLTTSKRWDSTSKTIIDFEPNE
TTDLEKSLLIRYQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSKFNI
KVQLQIVASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPFT
KEKLIQTQGTKEKVYEAAIEEKTKEYIFLRISRECCEELNLRADCEMQVELQFQLNRLPL
CEMHYALDRIKENSILFPDVSMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQ
LPPVLIIGPYGTGKTFTLAQAVKHILQQQDTSRILICTHSNSAADLYIKDYLHPYVEAGN
PQARPLRVYFRNRWVKTVHPVVHQYCLISSTHSTFQMPQKEDILKQRVVVVTLNTSQYLC
QLDLEPGFFTHILLDEAAQAMECETIMPLALANKNTRIVLAGDHMQLSPFVYSEFARERN
LHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYP
LTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQ
VFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKRKEQLLEDS
TEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHDNKSLHG
ITFEQIKTQLEALELKKTYVLNPLAPEFIPRALRQQHLGNTNKQQQSPPKGKVHHHNQNE
HFQNEGIVQPNPSVLIGNPIRAYTPPSPLGPHPNMGKSPSPVQRIDPHTGTSILYVPAVY
GGNVVMSVPLPVPWTGYQGRFAVDPRIITHQAAMAYNMNLLQTHGRGSPIPYGLGHHSPV
SIGQQQIQHQEKDQHEQNRNGKSDNNPGPEINKIRTPEKKPLESKQNDLDSNPQNRSPEA
RPGVAYPNPKFHRKDNLNPRHLNLHLTTPHTQYAVPHRHYQHLSQLPRQPFPVQQPSSLN
QQQNHFPEQLTQITPQPNQAIQQHNHLNQQTQQQSSQLSPTYQVGPSHSFFNNAVSHRPH
SPAVDAVVSEQHPPSMLQEAHSLRSIAQHNTMIPPTHLNNFIEESPPGLPLGEALERMHG
NVALETLRQQQARIQQWSEHNAYLSQSSLPYPHYHHPHLQHLPQQPAGLHQQPVRANWKL
ANNAEDEAEATHSRFQDLLRELAHHDQSETRELTEMPPPQSRLLQYRQVQTRSPPANPSS
SNSNHSGQFSNFNDNIRDIEMASNPAFQQHLPPQIYNPSFSIPSENLTSPPLKYLPPDGS
WTFANLHQNHLMGQGFHYGLPPLPHRPQQNSFIQIQNQHVVGQEPFHPLSSRVVSASSLH
SLEEYEPRGPGRPLYQRRISSSSVPPCSEELNTPQDSHAQGKEHQDHNNQSSFNYSSPEL
WVNTTSSAPHQNIPCNGSSRTAPPRELLAPSKPLKSSEDNLKSENLQLSNSFNYSMLQHL
GQFPPLMPNKQIVESNGNSQPSSGGNKPIMSYASALRAPPKPKPPPEQTKKKSDPLSLFQ
ELSLGSSSGSNGFYSYFK
NT seq
5817 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagaagacctgaaaagtcatgtgaacaagcatgtgaatctcttaaaagacag
gactatgaagtggcagtgagacattgcacagaggcccttctttcccttggccagtattcc
ttggcaaacttcacagagacatgcccatcagaaatagaacgcataaaaatcgagagtctt
ctatatagaattgcctcattcttacaacttaagaactatggacaagctgatgaggactgt
aggcatgttttgggagagggcttggccaagggagatggctcgtttcaagcagtgctttgt
tgcatgcatcttaaaggaaagctccaagttgtttctaatgttctttccaagtcactgatg
ggagagtctctgaatggaatggcaacaaaagatttgacaagactaaagacacttctcact
gaaacagagacagcaactagtaaagtgccatctgaatatcacgtggaagacttggaagaa
ggttctcggaatggttggcatttccgtcctccacctagaggaatcaccagcagtgaggag
tatactttgtgtaaaagattcttagaacaagggatttgtaggtatggtgcccagtgtaca
tcagcgcattcccaagaagagctatctgaatggcagaaaagatatgcatcaagacttata
aaattgaaacagcagaaagaaagtaaacagttttctggaagttacatggaaaccttgata
gagaaatggatgaattcactagctcctgagaaagtgcttagtgaatgtgtagaaggtgtg
tgggtggagcataatccagaattatctcttactgtcaccaccaaaaaatcttatcagaca
tggacatttgctctcacttgtaagcctgccagaatgctgtatcgagtagcattgctttat
gatgctcatcgtcctcattttagcatcattggaatatctgctggagatagtactactcaa
gtatcacaggaagtcccagaaaactgtcaagaatggataggagggaagatggctcagaat
ggattagatcattatgtgtataaaattgggatagcatttaacacagagatatttggaact
tttcgtcaaaccatagtttttgactttggattggaaccagtgctcatgcaaagagtaatg
attgatgctgcttctacagaagatcttgaatacctaatgcatgcaaggcaacaactacta
acgacatcaaagcgctgggattccacttctaaaactattatagattttgagcccaatgaa
actactgatttggagaaaagtcttcttattagataccaaattccactctctgctgatcag
ctatttacacaatctgttttagacaaatcattgacaaaaactaattatcagtcaaggtta
catgacctgctttatattgaggaaatagcacaatataaagaagttagcaagtttaacatt
aaagtgcaattgcagattgtagcaagcttcatgctcactggggtttctggaggtgcaaaa
tatgctcagaatggacagctttttggtcgatttaagctcactgaaactctttctgaagat
actttggcgggaagactagtgatgaccaaagtcaatgctgtttatttattaccattcact
aaagagaaattaatacagacccagggaaccaaagagaaggtttatgaagcagctattgaa
gaaaaaacgaaagaatatatcttcttgaggatatccagggaatgctgtgaagagcttaat
cttcgagctgattgtgaaatgcaggttgaactacagtttcaattaaatcgattaccactt
tgtgaaatgcattatgctttggacaggatcaaagaaaatagtattctgtttccagatgtt
agcatgactcccaccataccttggagtcccaacaggcaatgggatgaacagttggatcct
cgactaaatgcaaaacagaaagaggcggttctggctattaccaccccactttcaatacag
cttcctcctgttcttatcattggtccctatgggacaggcaaaaccttcactctagctcag
gcagtcaagcacatactccagcaacaggatactagcaggattctcatttgcacccattct
aatagtgctgctgatctctacataaaggattatttacatccatatgtagaagcaggcaat
ccccaggcgagacctctcagggtatatttcagaaatcgctgggtaaagactgtccaccca
gttgtacatcagtactgtttgatttcaagcacacattccacctttcagatgccacagaaa
gaagacattcttaaacaacgagttgtagttgttacattgaatacttcacagtacctttgt
caactggatcttgaacctgggttttttacacacattcttttggatgaagctgcacaggcc
atggagtgtgaaaccattatgcctctggcattagctaataaaaacacacgaattgttttg
gctggagaccatatgcaactcagtccttttgtctatagtgagtttgccagggagagaaac
cttcatgtttcattactggatcggctctatgaacattatcctgcagagtttccatgtcgg
atcctactgtgtgagaactatcgttctcatgaagctatcatcaattacacatcagaactt
ttctatgaagggaagttgatggcaagtggaaaacaaccagcacacaaagatttttatcca
ttaaccttctttacagcacgaggagaagatgtacaggaaaaaaatagtacagccttttat
aataatgcagaggtatttgaagtggtggaacgggtggaagagttaaggagaaagtggcct
gtagcttggggaaaattagatgatggaagtataggtgtagtcactccttatgctgatcag
gtgttcaggatccgggcagaacttcgaaaaaagagattatctgatgtcaatgtggaaaga
gtgctcaatgtgcagggaaagcagtttagggttttgtttctgagtacagtacgtacccgg
cacacttgcaaacataaacaaaccccaattaaaaggaaagagcaactgttagaagattca
acagaggatttggattatggttttttgtccaactacaaacttctcaacaccgccataaca
agagcacagtccttggtagctgtggtgggtgatcctattgcgctgtgctctattggaaga
tgcaggaaattttgggagcggtttattgccttgtgtcatgacaacaaaagcctacatggt
atcacttttgaacagatcaaaacacagttagaggctttggagctaaagaaaacatatgtg
ttgaatccacttgctcctgaatttatccctcgcgctctaagacagcaacatttggggaat
accaacaaacagcagcaatcaccacccaagggaaaagtccatcatcataaccaaaatgaa
cacttccagaatgaaggaattgttcaacccaatccttcagtactcattggcaatcctatt
agagcatatacacctccttcccctcttggacctcacccaaatatgggaaaatctcctagt
cctgttcaaaggatagatcctcacactgggactagtattctttatgtaccagctgtctat
ggaggaaatgtggttatgtccgtgcctttacctgtaccatggacagggtaccagggtagg
tttgcagttgaccctcgaatcattacacatcaggcagcgatggcatataatatgaacctg
ttgcagacacatggacgggggtctcctataccatatggccttggacatcattcaccagtt
agtatagggcaacagcaaattcagcatcaggaaaaggatcaacatgaacaaaatcgaaat
ggtaaaagtgataataatcctggacctgaaataaataaaattcgtactccagagaaaaag
cctctagaatcaaaacagaatgatttagattcaaatccacaaaaccgaagtccagaagct
cgccctggtgttgcttatcccaatcccaaatttcatcgcaaagataatctcaacccaaga
cacctaaatcttcatcttacaactcctcacacacaatatgcagtccctcatcgccattat
cagcacttatcccagctaccaagacaaccatttccagttcaacagccctcaagtttaaat
cagcagcaaaatcatttccctgaacaactgactcaaataacacctcaaccaaaccaagca
atacagcagcataaccacttgaatcaacaaactcaacagcaatcctctcaactttctcct
acatatcaagtaggtcccagtcattccttcttcaataatgcagtctctcatcgaccacat
tctcctgctgtagatgcagtagtatctgaacagcaccccccttcaatgctgcaagaagct
cactctctgagatccattgcacaacacaacacgatgataccccctactcacttgaataat
tttattgaagaaagtcctccaggattaccattaggagaagctttagaacgtatgcatggg
aatgtggccttagaaacattaaggcaacaacaagcaagaatacaacagtggagtgagcat
aatgcctatctcagtcaaagcagtcttccatatccacactatcaccatcctcacttgcag
catcttccccagcaacctgcaggattacatcaacagccagttagagcaaactggaaactt
gccaataatgcagaagatgaagcagaagcaacacattcgaggtttcaagacttactcaga
gagctggctcatcatgatcaaagtgaaacacgggagttaactgaaatgccaccacctcaa
tcaagacttttgcaatatagacaagttcaaactagaagcccaccagcaaacccttcttca
tctaattcaaatcatagtggtcaattttctaacttcaacgacaacattagagacattgaa
atggccagcaatccagcatttcagcaacatctgccaccccagatatataatccctcattt
tcaataccatctgaaaaccttacatctcctcctttgaaatacctgccaccagatggatcc
tggacctttgctaatttacatcagaatcacttaatgggacagggctttcactatggccta
ccgccattaccccacagaccacaacagaactcttttatacaaattcagaatcaacatgtg
gttggtcaggagccatttcacccactgtcatctcgtgtggtatctgcttcttcgctccac
agcttagaagagtatgaaccacgaggaccaggcaggccattgtaccaaagaagaatttca
tctagttcagtaccgccttgttctgaagagttaaacactcctcaagatagtcatgctcag
ggtaaagagcatcaggaccataataatcaatcttctttcaactattcatcaccggagttg
tgggtaaataccacctcatctgctccacatcagaacattccatgcaatggatccagcaga
acagccccgcccagagaattgttagctccatcaaaacccttgaaatcctctgaggataac
ctgaaatctgaaaaccttcagctgtccaattccttcaactacagcatgttgcagcatcta
ggccagttcccacccctcatgcccaacaagcagattgtggaatcaaacggcaacagccag
ccaagttctggggggaacaaacctattatgtcctacgcaagtgctctgcgggcgcctcca
aagcccaaacctccacctgaacagacaaaaaagaagagtgaccctttgtctctgtttcag
gaacttagtttaggtagctcatcaggtagcaatggcttttattcctattttaaataa
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integrated database retrieval system
