Antechinus flavipes (yellow-footed antechinus): 127561057
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Entry
127561057 CDS
T08818
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03013
Nucleocytoplasmic transport
afz03015
mRNA surveillance pathway
afz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127561057
09122 Translation
03013 Nucleocytoplasmic transport
127561057
03015 mRNA surveillance pathway
127561057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afz03019
]
127561057
03041 Spliceosome [BR:
afz03041
]
127561057
Enzymes [BR:
afz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127561057
Messenger RNA biogenesis [BR:
afz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127561057
Spliceosome [BR:
afz03041
]
Complex C
Other components
EJC/TREX
127561057
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127561057
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
127561057
NCBI-ProteinID:
XP_051852155
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All DBs
Position
4:complement(189811430..189820613)
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AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaatgatgtggacaatgaactcctggattatgaagatgatgaagtggagaca
gcagctgggggagatggagctgaggcccctgcaaagaaagatgtgaaaggctcctatgtc
tccatccacagttctggcttccgtgactttctacttaagccagagctgctccgagccatt
gtagattgtggctttgagcatccatctgaagtccagcatgagtgtatacctcaggccatc
ttgggaatggatgtcttgtgccaggccaagtcaggcatgggaaagacagctgtgtttgta
ttggctacgctgcagcagctggaaccagtcactggtcaggtttctgtgctggtgatgtgt
cacacccgggagctggcttttcagatcagcaaagaatatgagcgtttctccaaatacatg
cctaatgtcaaggtggcggtgttttttggtggtctgtcaataaaaaaggatgaagaggtg
ctgaagaagaactgtccacacattgtcgtggggactccaggccgtatcttagccctggcc
cgaaataagagcctcaatctcaagcatattaaacattttatcttggatgagtgtgacaaa
atgctcgaacaactcgacatgcgtcgggatgtccaggaaattttccgcatgaccccccat
gagaagcaggtcatgatgttcagtgccaccctgagcaaagagatccgccctgtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcac
gggctgcagcagtactacgtgaagctgaaggacaatgagaagaaccgaaagctcttcgat
ctcctggatgttctggagttcaaccaggtggtgatcttcgtgaaatctgtgcagcgctgc
attgccctggcccagctcctagtggaacagaatttcccagctattgccattcatcgtggg
atgccccaagaggagaggttgtcccggtatcaacaattcaaggatttccagcgtcgaatc
cttgtggccactaacctgtttggccgaggcatggatattgagcgagtaaacattgccttc
aactatgacatgccagaggattcagatacctacttacatagggtggctagggcaggccgg
tttggtacaaaaggtttggccatcacgtttgtatcagatgaaaatgatgccaaaatcctc
aatgatgtccaggatcgctttgaggttaacatcagtgaactgcctgatgaaatagacatt
tcttcctacattgagcagactcggtag
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