Antechinus flavipes (yellow-footed antechinus): 127561086
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Entry
127561086 CDS
T08818
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127561086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afz03019
]
127561086
Enzymes [BR:
afz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127561086
Messenger RNA biogenesis [BR:
afz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
127561086
mRNA degradation factors
3'-5' decay
Ski complex
127561086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
127561086
NCBI-ProteinID:
XP_051852203
LinkDB
All DBs
Position
4:190342060..190352823
Genome browser
AA seq
1249 aa
AA seq
DB search
MLETERLVLPPRGPLDLPFCALELGCTGRWELLSQPQVSDSPAGTLSHGLPPCAPELQGE
TEQLFLSSPEWLPLHGVERVAWKWQRKTDPWSLLGLPGAPVPSDLQAQRHPTTGRVLGYR
EVLLEDTNLSATTSLSLRRPPGPSSQALWGNPTHYPFWPGGMDEPTIADLSICGDSEEEI
DFEKDLLTIPPGFKKGVGFTPKNNSTPASGLLSLSHLLEPLELGGGEEEEEETSGRLGGP
GGDSVTASTSELPLVHASSLEDLVLKDASAPLSPPEPPKPPVLEQWAIPVDITSPVGDFY
RLIPQPAFQWPFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTI
YTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDL
EWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRHLYV
ISTAARPVPLEHFLFTGNSPKTQGELFLLLDSRGVFHTKGYYAAVEAKKERTSKHAQTFG
AKQPMHQGGPGQDRGIYLSLLASLRSRAQLPVVVFTFSRGRCDEQASGLSSLDLTTSSEK
SEIHLFLQRCLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVK
VLFATETFAMGVNMPARTVVFDSMRKHDGATFRDLLPGEYVQMAGRAGRRGLDPTGTVIL
LCKGRVPEMADLHRMMLGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRK
DSKAHEQTLAELTKRLGDLEEPDTSGQLVDLPEYYSWGEELTETRGLIQRRIMESVNGLK
SLSVGRVVVVKNQEHRNALGVILQVSSDTTNRVFTTLILCEKQPLEGPLPGSSRSLDVPY
PDDLVGHKLFLPEGPCDHTVAKLQPNDIIAITTKMLRVNGERILEDFSKRQQPRFKKDPP
SPLVTSAVQEMLRLAQAHPAGPPTLDPVNDLQLKEVLVVEGGLRARKLEELIRGAQCVHS
PRFPAQYLRLQERVQIQKEMERLRFLLSDQSLLLLPEYHQRVEILRTLGYVDGAGTVKLA
GRVACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQLPSTLKQGIER
VKDVARRIGEVQVSCGLNQTVEEFVGELHFGLVEVVYEWARGMPFSELAGLSGTPEGLIV
RCIQRLAEMCRSLRGAARLVGEPVLGAKMEAAATMLRRDIVFAASLYTQ
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atgctggagacggagcgtctggtactgccccctcgggggcccctggatttgcctttctgt
gcgctggagctcggatgcactgggcgctgggagcttctgagccagcctcaggtctcggat
tcgcccgccggcaccctctctcatgggctaccaccctgtgccccagaactgcaaggagag
actgagcagttgtttctgtcatcccctgaatggctgcccctgcatggtgtggaacgtgtg
gcctggaaatggcagagaaagacagatccctggtctctcctggggctgccaggagcacct
gtcccatcagatctgcaggctcaaagacacccaaccaccggcagagtcctgggctacaga
gaggtcctattggaggacacaaacctctcagccacaacttccctgtctctacgccggccc
ccaggaccctcatcccaggctttatggggcaacccaacacactatccattttggccaggt
gggatggatgaacctaccatagcagatctgagcatttgtggggactctgaggaagagatt
gactttgagaaagatctccttaccattcctccaggcttcaagaaaggtgtaggattcact
ccaaagaataactcaacccctgcttctggcctcctcagtcttagccatcttctcgaacca
ctggaacttggtggaggggaggaggaggaagaagagacttcaggaagattgggaggtcct
ggaggggacagtgttacagcctccacttctgagctcccactggttcatgctagtagcctg
gaggatttagtcctaaaggatgcatcagcccccttgtcacctccagaacctccaaagccc
ccagtcttggaacagtgggctattcctgtggatattacttcacctgtgggagatttctac
cggcttatcccccaacctgccttccagtggccgtttgaaccagatgtatttcagaaacag
gctattctgcacctggagagacatgactctgtatttgttgctgctcacacatctgcagga
aagactgttgtggctgaatatgccattgcccttgcccagaaacatatgacccgtaccatc
tatacatcacctatcaaggccctgagtaatcagaaatttagagatttccgaaacaccttt
ggtgatgtgggactcctcacaggggatgtccagctacatcctgaagcttcctgcctcatt
atgaccacagagatccttcgctccatgctgtatagtggctcagatgtgattcgagacctc
gaatgggtgatatttgatgaggtccattacatcaatgatgctgagagaggagtagtatgg
gaagaagtcctcatcatgcttcctgatcatgtttccatcattctcctcagtgctactgtg
cccaatgcccttgaatttgcagattggattgggaggctgaagcgtcggcatctctatgtg
atcagcacagctgcccgaccagttcccttggaacattttctgttcactgggaatagtcca
aaaacccaaggagagctctttctgcttctggattcccgaggagtttttcacactaaggga
tactatgcagctgtggaggccaagaaagaaaggactagcaaacatgcacagacctttggg
gcaaagcagccaatgcaccaaggtggtcctggacaggaccgaggcatatacctgtccctc
ttggcctccctacggagccgtgcccagctccctgtggttgtgttcaccttctcccggggc
cgctgtgatgagcaagcatcaggcctcagctcccttgatcttaccaccagctctgagaag
agtgagatccacctcttcctgcagcgatgccttgcacgacttcgaggctccgaccgccag
ctacctcaggtactgcatatgtcagaactccttcgccggggtctaggtgtacaccacagc
ggtatattgcccattctcaaggagatcgtggaaatgctcttcagtcgtggtttggtcaag
gtcctatttgctacagaaacctttgccatgggtgtgaacatgccagcacggactgtggtg
tttgattctatgcgcaagcatgatggtgcaactttccgtgacttgctccctggggaatat
gtacagatggcagggcgggcagggcgtcgtggtctggaccctacaggtactgtcatccta
ctctgtaagggacgtgtgcctgagatggctgatctgcataggatgatgttgggaaagcct
tcccagctacagtcccaatttcgcctcacatatacaatgattcttaacttgctccgggtc
gatgccctcagagtggaagatatgatgaagagaagcttttctgagttcccttcaagaaag
gacagcaaggcacatgagcagactttggcagaattgacaaagagacttggggacctagag
gagccagatacctcagggcagcttgttgatcttcctgagtattacagctggggggaagag
ctgacagagactcgaggcctaatccagcgacggatcatggaatcagtgaatgggctgaaa
tctctgtcagtgggaagagtggtagtggttaagaatcaggagcatcgaaatgcacttgga
gtgatcttgcaggtctcctcagataccacaaaccgagttttcacaaccttgattctctgt
gagaagcagccccttgaggggccactgcctggcagttccagatcccttgatgtcccctat
cctgatgatttagtgggtcacaagctattcctgcctgaagggccttgtgatcatactgtg
gcaaaacttcagccaaatgacatcattgctattacaacaaagatgctacgggtgaatggg
gagcgaattttggaggattttagcaagaggcagcagccaagattcaagaaggaccctccc
tctccattggtgacctctgctgttcaggagatgctccgattggctcaggcacacccagcg
gggccccccaccctggatccggtcaatgacttacaactgaaggaagtgttagtagttgag
ggtgggcttcgtgctcggaagctagaggaattgattcgaggtgcccagtgtgtgcacagt
cccaggtttccagcccagtacctgagactgcaggaacgtgtgcagatccagaaggagatg
gaaagattacggtttctactttcagaccagtcattgctcctgctgccagagtatcatcag
cgagtggagatcctgaggacattgggctacgtggatggggcagggaccgtgaaactggca
ggaagggtggcatgtgccatgagtagtcatgaactgcttctgacagagctcatgtttgac
aatgcactgagtgcccttcggccagaagagattgctgctctgctatctggccttgtctgc
caaagtcctggagatcctggagaccaattgccaagcactcttaaacagggcatagagcgt
gtcaaggatgtggcccggcggattggtgaggttcaagtatcctgtggcctaaaccagact
gtggaagagtttgtgggagaactacactttgggctggtagaagttgtctatgagtgggca
cgaggcatgcctttctctgagctggcagggctatcagggaccccagaaggtctgattgtc
agatgtatccagcgcctggcagagatgtgtcgttcattgcgaggggctgcccggctggta
ggagaacctgtgctaggtgctaagatggaggcagctgccacaatgctccgtcgtgacata
gtttttgctgccagtctctatacccagtga
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