Antechinus flavipes (yellow-footed antechinus): 127562531
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Entry
127562531 CDS
T08818
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
127562531
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
afz04147
]
127562531
00535 Proteoglycans [BR:
afz00535
]
127562531
00536 Glycosaminoglycan binding proteins [BR:
afz00536
]
127562531
Exosome [BR:
afz04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
127562531
Proteoglycans [BR:
afz00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
127562531
Glycosaminoglycan binding proteins [BR:
afz00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127562531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
127562531
NCBI-ProteinID:
XP_051854263
LinkDB
All DBs
Position
4:1285066..1379015
Genome browser
AA seq
1510 aa
AA seq
DB search
MAPLPSSVALLFLLAAHWPGAGAQFFNWWGPKATEAPPGALLVTSTPQGGPAPSAGSAAP
SASPAAPSSTPGAIPEERPEPGSPAPANASAAPTPSRASPERADLKEENLAGVGAKILNV
AQGIRSLVQFWDESSNAESSAEGEAAAGASTTLPTLPSAGAGAEPSAPGSVGTQAAGEVS
PPDAPRPTSASAPPPGSGAPELAPGQPSAPPPENASSEVSLVQLLGQPPPQHVSQVYDPD
SGPAYAFGPDASGGQVARYHVPSPFYRDFSLLFHVKPTSARAGVLLALTDAAQAVISVGV
KLSAPRGGKQDVLFFYTEPGARETRTAASFSLPSFVNQWTRFALSVDGDEVALYVNCKEI
QRLPLARSAQELELEPGAGLFVAQAGGADPDKFQGVISELKLRGDPRVTLLQCLDDDDDD
SDGASGDFGSGEYEQGAASGAHMEPPLLPGLPEAPPVTLPPLDRIPTTSQPSFVEAGASS
GVPPAPSGEEGARGSGRSEGAQDQDRRGAEEGPRHEAPGLKGQKGEPGARGPPGPVGPQG
PAGPALHHPDGSTAQQVPGPPGPPGKDGEPGDPGEDGKPGEMGPQGFPGTPGDAGPKGEK
GDPGIGPMGPPGPPGPPGPPGPAFRPDKLTFIDMEGSGFGGDLESIRGPRGFPGPPGPPG
VPGLPGEPGRFGMNSTDGPAPPGLPGVPGRDGSPGPRGPPGPAGLPGKDGQQGPQGPKGD
QGDVGSPGLKGSKGDAGPVGAPGETGLAGLPGPMGPRGLPGPPGPPGPGWGAGFDDMEGS
GGTFWTAGPGTRGAEGPQGLPGFPGLKGDRGAAGLPGEKGDPGLPGLPGSEGVPGAQGPK
GDPGSPGQKGEPGKDGLGQPGPPGPPGPPGELTYVSEDGRTLAGVAGREGRPGYAGFPGP
AGPKGDNGLPGSPGAKGEKGEPGSVLTLAEKGDKGEQGHRGPPGPYGRPGYKGEIGMPGR
PGRPGMNGLKGEKGEPADAGRGVGPRGPPGLPGPPGPPGPPGSFGTSFYDNNGFLEPGRP
GPPGLPGYQGPPGAKGDKGEAGPAGPPGLLPYDFSSLVEHMKGEKGEAGTKGERGEPGSG
GFFSSGVPGLPGPPGPPGYPGVPGPKGESVRGQPGPPGPQGPPGIGYEGRQGPPGPPGPP
GPPSFPGPHRQTISVPGPPGPPGPPGPPGTSGTSSGQLRLWSSYQSMLQQAHEVPEGWLV
YVADREELFVRVRGGLRKVPLEARIALSRGADNEVAVLQPPVVEYSPGNPAPAGSLPYPR
RGHPHSTAKPWRADDIQAGPPRFPEHGGQHPPYPGVQQQHHDRVPSYHGAYANGRPAQPT
AALLHTHHDFQPALHLIALNGPQSGSMRGIRGADFQCFQQARQVGLMGTFRAFLSSRLQD
LYSIVRRADRGNVPILNLQDELLFDNWEALFSGSEGQLRPGARILSFDGRDVLQHAAWPQ
KSVWHGSDAKGRRLTESYCETWRTDQGAATGQASSLFSGRLLEQKAVSCHNSFIVLCIEN
SFMTSSSSKK
NT seq
4533 nt
NT seq
+upstream
nt +downstream
nt
atggcaccccttccgagcagcgtggccctcctcttcttgttggccgctcactggcccggt
gccggggctcaattttttaactggtggggcccgaaggcgaccgaagcccccccgggagcc
ctcctggtcacctcgacgcctcagggcgggcctgccccctctgcagggtccgcagcccct
agcgcaagccctgctgccccgagtagcacccccggggcgatcccggaggagcggccggag
cccgggtcccccgcccccgccaatgccagcgctgccccgaccccctcgcgggcgtccccc
gagagggcggacctcaaggaggagaacctcgccggcgtgggcgccaagatcctgaacgtg
gcccaggggatccgcagtttggttcagttctgggatgagagcagcaacgcggagagttct
gccgagggggaggcggcggccggcgcctccacgacccttcccacgctcccctccgccggg
gccggggcggagcccagcgctccggggagcgtgggcacccaggctgccggggaggtttcc
ccgcccgacgccccccgcccgacctctgcctcggccccccctccgggaagcggggccccg
gagctggccccgggacagccctcggcccctcccccagaaaacgcgagctccgaggtgagc
ctggtgcagctgctcgggcagccgcccccccagcacgtctcccaggtctacgaccccgac
agcggcccggcctacgccttcgggccggatgccagcggcgggcaggtggcgcgctaccac
gtgcccagccccttctaccgggacttctcgctgctcttccatgtcaagcccaccagcgcg
cgggcgggggtgctgctggcgctcacggacgcggcccaggccgtcatctcggtgggcgtg
aagctctcggcgccgcgcgggggcaagcaggacgtgctcttcttctacacggagccgggc
gcccgcgagacgcgcacggcggccagcttcagcctgccctccttcgtgaaccagtggacg
cgcttcgccctcagcgtggacggcgacgaggtggcgctctacgtcaactgcaaggagatt
cagaggctcccgctggcgcggtcggcgcaggagctggagctggagcccggggccggcctc
ttcgtggcccaggcgggtggcgccgaccccgacaagttccagggggtgatctccgagcta
aagctgcgaggggacccccgggtgactctgctgcagtgtctggatgatgacgatgacgac
agcgacggggcgtccggagactttggaagcggagaatatgagcagggggcagcctcgggc
gcgcacatggagccccccttgttgcccgggctccctgaggctccaccggtcacgttgcca
cccctggacaggatccccacgacttcacagccgagctttgtggaggcaggagcctcctct
ggagtgccgcccgctcccagtggggaggagggggctcgaggctcaggcaggtctgaaggg
gctcaggaccaggacaggagaggagcagaggaaggccccagacacgaggctccaggcttg
aaggggcagaaaggtgagcccggggctcggggcccgcctgggccggtcggtccccagggc
cccgccggccccgccctccaccacccagacggttccacggcgcagcaggtgcctgggccg
ccaggaccccccggcaaggacggagagcccggggatcccggtgaggacggaaagccgggc
gagatggggcctcagggcttcccgggaaccccaggagacgcggggcccaagggcgagaag
ggagatcctggcattgggccgatgggcccccctggtcccccgggacccccgggacctccc
ggacccgctttccgacccgacaagttgacttttatcgacatggaaggatctggctttgga
ggggacctggagagcataaggggtcctcgaggattcccagggcccccggggcccccaggt
gtgccgggcttaccaggagagccggggcggtttggaatgaacagcactgatgggccggcc
ccccctggccttcctggggtgccaggaagagatggctcccctggaccccgaggacccccg
ggccccgcagggcttccaggaaaggatgggcagcaaggcccccaggggccgaaaggagac
cagggcgacgtgggctccccaggactgaagggcagcaagggagacgccggcccggtcggt
gctccaggagaaacgggcttggctggtctcccgggacccatgggccctcgaggactgccg
ggccccccggggcctcctggtcctggctggggagctggatttgatgacatggaaggctca
gggggaacgttctggaccgccggcccgggcacgcgaggggccgagggaccacagggactg
cccggctttcctgggctcaagggtgaccggggtgcggctggactccctggagagaaggga
gatcccggccttcccgggctgccggggagtgaaggcgtgccaggggctcagggccccaaa
ggggatccaggaagccccgggcagaagggagaaccagggaaggacgggctggggcagcct
ggcccccccgggcctcccggccccccaggagagctgacctacgtgtccgaggacgggaga
acgctggccggtgtggcaggacgggagggcagacccggctacgctggattcccgggccca
gctggtcccaagggagataacgggctgccgggctccccgggagccaagggggagaagggc
gagcctggaagtgtcctcacgctggccgagaaaggagacaagggggagcaaggtcacagg
gggcccccgggcccgtacgggcggccagggtacaaaggcgaaatcgggatgccgggaagg
ccgggccgcccgggcatgaacggcctgaagggcgagaagggggagcctgcggacgccggc
agaggcgtaggaccgaggggccctcctggactcccagggcccccgggtcccccgggcccc
ccaggctcctttggtacttctttctatgacaataacggattcctcgagcccggccgccct
gggcctccaggactgccaggttaccaaggcccccccggagccaagggcgataagggagaa
gccggacctgccgggccaccagggctcctgccatatgatttcagctccctggttgagcac
atgaagggagagaagggggaagcaggcacgaaaggggaacggggagaacccggcagtgga
ggatttttcagctccggagtcccaggcctgcccggcccccccggtcccccaggatacccc
ggagttccgggtcccaagggagagagcgtcaggggtcagcccggccccccaggacctcag
gggcctccgggcataggctatgagggacgacagggcccccccgggcccccagggcctcca
ggaccgccatcgttcccaggaccgcacaggcagactatcagtgttcctggcccccccggg
cccccaggtcccccggggccccctgggacttcagggacatcatcagggcagctgaggctg
tggagcagctaccagagcatgctgcagcaggcccacgaggtgcccgagggctggctggtc
tacgtggccgacagggaggagctgttcgtgcgcgtgcgcggcggcctcaggaaggtcccg
ctcgaggcccggatcgcgctctcgcggggggcggataacgaggtcgcggtcctgcagccg
cccgtggtggagtattccccggggaacccggcgcccgcgggcagcctcccttacccccgc
cggggccacccgcactctactgccaagccgtggcgggcggacgacatccaggccggcccc
ccccgcttccccgagcacggcgggcagcaccccccgtaccccggcgtccagcagcagcac
cacgaccgcgtccccagctaccacggcgcctacgccaacgggcggccggcccagcccacg
gccgcgctgctgcacacccaccacgacttccagcccgcgctccatctcatcgctctcaac
ggtccccagagcggcagcatgcgcggcatccggggggccgacttccagtgcttccagcag
gcccgccaagtgggcctgatgggcaccttcagggccttcctgtcctcccggctgcaggac
ctctacagcatcgtgcgcagggccgaccgcggcaacgtgcccatcctcaacctgcaggac
gagctcctctttgacaactgggaggcgttgttctccggctccgaaggccagctccggccg
ggcgcccgcatcctctcttttgacggcagggacgtcctgcagcacgccgcctggccgcag
aagagcgtgtggcacggctctgacgccaagggacgccggctgacagagagctactgtgag
acctggcgcacggaccagggggccgctaccggccaggcgtcctccctgttctcgggcaga
ctgctggagcagaaggccgtgagctgccacaactccttcatcgtcctctgcatcgagaac
agcttcatgacctcctcctcctccaagaagtag
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