Agarivorans sp. OAG1: OAG1_01140
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Entry
OAG1_01140 CDS
T09980
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
agar
Agarivorans sp. OAG1
Pathway
agar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OAG1_01140 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agar03019
]
OAG1_01140 (rhlE)
Enzymes [BR:
agar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OAG1_01140 (rhlE)
Messenger RNA biogenesis [BR:
agar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OAG1_01140 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
Utp25_C
Phage_integrase
Cas3-like_C_2
P-loop_SecA
HI1480
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BEU01314
LinkDB
All DBs
Position
complement(123429..124778)
Genome browser
AA seq
449 aa
AA seq
DB search
MSFDSLGLSKPLLDAVAAQGYDTPSPIQAKAIPVILEGKDIMAAAQTGTGKTAGFTLPLL
ELLSKGPKVRANQVRALVLTPTRELAAQVGESVSTYGKNMDLSSTVVFGGVKINPQMQKL
RRGADVLVATPGRLLDLYQQNAFRFQQLEVIIFDEADRMLDMGFIHDIRKILALLPKQRQ
TLMFSATFSEEIRTLAKSLVKDPIEVSVTPPNATAKTVKQWIVPVDKSKKSGLLTQLIKD
NDWQQVLVFSRTKHGANRLAKHLEQRKISAAAIHGNKSQGARTRALAEFKSGDVRVLVAT
DIAARGLDIDQLPQVVNFDLPNVAEDYVHRIGRTGRAGSTGQAVSLVCADEVGDLIGIER
LTGQLLERKEVAGFEPSTQLPVTRDTRPLKAKKPKKPKSPRSEHKDGQRSSENARGNKPV
GKNRRHTGGGTNKTSRRFSKPKAANSGNK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgagctttgactccctgggtttatctaaacctttattagacgccgtagccgcacaaggt
tacgacacgccctctcccattcaagccaaagccattcctgtgattttagaaggcaaagac
atcatggccgccgcgcaaacaggcaccggtaaaacagcaggttttaccttgccattgctc
gagttgttaagtaaaggacccaaagtacgcgccaatcaagttcgcgcccttgtgcttacc
ccaacacgtgagctagctgcgcaggttggcgaaagcgtgagtacttacggcaagaacatg
gacctaagctctacggtagtatttggtggagtgaagattaatccgcaaatgcaaaagctg
cgtcgtggcgctgatgtgctggtagcaacccctggccgtttattagatctttaccagcaa
aacgcctttcgttttcagcagttagaagtgattatatttgacgaagctgaccgcatgtta
gacatgggctttattcacgacattagaaagattttggccttgctgccaaaacagcgccaa
accttaatgttctcggctaccttctcagaagaaattagaacactggccaaaagcttggtt
aaagaccccattgaagtatcggtaacaccaccaaacgcaactgccaaaaccgtaaaacag
tggattgtaccggtagataaaagtaaaaagtctggcctgcttactcagctgattaaagat
aatgattggcagcaagtattggtatttagccgtactaaacatggcgctaaccgcctagcc
aaacatttagaacagcgcaagatttcagccgctgcgattcacggcaataaaagccaaggc
gcacgtacccgggcgctggctgaatttaaaagtggtgatgtacgagtattagttgccacc
gatattgcagcacgtggcttagatatcgatcaattgccacaagtggtgaactttgattta
cctaatgtggccgaagattacgtgcaccgcattggccgtactggccgagcgggttcaaca
ggtcaggcagtgtctttggtatgtgctgatgaagtgggagatttaattggcattgagcga
ctcactggccagttattagaacgtaaagaagtagccggttttgaaccaagcacccagtta
ccagtaacccgcgatactcgccccttaaaagctaaaaagccgaagaagcctaaaagtcca
cgtagcgaacataaagatggtcagcgctctagcgaaaatgcacgtggtaacaaaccggtc
ggaaaaaatcgccgccacaccgggggtggcaccaataagaccagccgccgctttagcaaa
cccaaagctgctaattcgggtaacaaataa
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