Agarivorans sp. OAG1: OAG1_04040
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Entry
OAG1_04040 CDS
T09980
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
agar
Agarivorans sp. OAG1
Pathway
agar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OAG1_04040 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agar03021
]
OAG1_04040 (rpoA)
03400 DNA repair and recombination proteins [BR:
agar03400
]
OAG1_04040 (rpoA)
Enzymes [BR:
agar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OAG1_04040 (rpoA)
Transcription machinery [BR:
agar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OAG1_04040 (rpoA)
DNA repair and recombination proteins [BR:
agar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OAG1_04040 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
BEU01604
LinkDB
All DBs
Position
435685..436671
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AA seq
328 aa
AA seq
DB search
MQGSVTEFLKPRLVEIEQVSPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSSKEGVQEDILEILLNLKGIAVKLEGKDEVTLSLTKSGAGPVVAGDIQHDAD
VEITNPEHVICHLSSNAEISMRIKVERGRGYVPASVRVHSEDEERPIGRLLTDAAYSPVE
RIAYTVEAARVEQRTDLDKLVIDMETNGTLDPEEAIRRSATILAEQLDAFVDLRDVSEPE
EKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPASIADK
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtaacagagtttctaaaaccaaggctagttgagatcgaacaagttagc
ccaactcgtgcaaaagttacgcttgagccgttagagcgtggttttggccacactttaggt
aacgctcttcgtcgtattcttttatcttctatgccaggttgtgcggtaactgaagtagaa
atcgatggcgtgttgcatgagtacagcagtaaggaaggtgttcaagaggatatcttggaa
atcttgcttaacctaaaaggtattgctgtaaagttagaaggtaaagacgaagtaacctta
agtcttaccaagtctggagcaggtcctgtggttgcaggcgacattcagcacgacgctgat
gtcgaaatcactaaccctgagcacgttatttgtcaccttagcagcaacgctgaaatcagc
atgcgcattaaggtagaacgtggtcgtggttacgtaccagcttcagttcgggttcactct
gaagatgaagagcgtccaattggtcgtttgctaacagatgctgcttacagcccagtagag
cgtatagcttatactgttgaagctgcacgtgtagagcaacgtactgacttggacaaattg
gttatcgatatggaaaccaatggtactcttgatccagaggaagctatccgccgcagtgca
acaattcttgcagagcagttggatgccttcgttgacttacgtgacgtaagtgagccagaa
gaaaaagaagagaagccagagtttgatccaatcctgcttcgtcctgtcgatgatctagag
ttgacagtacgctctgctaactgtttgaaggcagaagcgattcattacattggtgacttg
gtacaacgtaccgaagttgagctacttaaaacccctaacttgggtaagaagtcgcttaca
gaaatcaaagatgtattagcatcacgtggtctatctctaggtatgcgcctagaaaactgg
ccacctgctagcattgctgataagtag
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