Agarivorans sp. OAG1: OAG1_18000
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Entry
OAG1_18000 CDS
T09980
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
agar
Agarivorans sp. OAG1
Pathway
agar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OAG1_18000 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agar03400
]
OAG1_18000 (mfd)
Enzymes [BR:
agar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OAG1_18000 (mfd)
DNA repair and recombination proteins [BR:
agar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OAG1_18000 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BEU03000
LinkDB
All DBs
Position
complement(1959930..1963385)
Genome browser
AA seq
1151 aa
AA seq
DB search
MLLNLPCPVDAGDQKQVSNLPGSALAFVIQEYIAQLDAPIVILTEDTRSALQIEREVNGL
KPQRALHLLPDWETLPYDTFSPHQDIVSQRILSLNQLSHDKNSVLIAPIATWLQRCAPAE
FLAKHSLQLKVGQSLNLNAFKERLVSAGYQHVDQVMEHGEFALRGSLLDLFPMGSNLPFR
LDFFDDELDSIREFDPDTQRSAEQRKSITLLPAHEFPTDAGGIETFRQQWRDRFEPSRDA
GSIYQQVTKGIMPAGIEYYLPLFHAHTESLTDQLATNTVILKVGDLDHAGKQFWSELTDR
YENRRYDKARPILPPDELYQSIEQCFKELKQFAGVKLHKGPARNSQGKLNLDAHALPDLS
VNHRLNLPLQALSHYLEHHPKPKTCFIAETEGRREALKNLLSPLKLRIKDVASISEFLAS
KDSLAMVVAPLDKGFELKDPNVQLISEVDLLGDKVRAKQRKASSKTLNPDVLIRNLAELS
IGQPVVHIEHGVGRYHGLSSFENGGIKTEFLTLEYANEAKLYVPVNALHLISRYSGANDE
TAPLHKLGNDQWQKAKAKAAEKIRDVAAELLEVYAKRAAKPGFGYELDDAAYQQFAADFP
FEETDDQQQAIGATLQDMQTPNAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVAVLVPT
TLLAQQHFDNFSDRFANWPIEVASLSRFKTTKEQNVVLKDLAAGKVDVIIGTHKLLSKDV
KFADLGLLVIDEEHRFGVRQKEQIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT
PPAKRLAVKTFVRQHDAALIKEAISREVMRGGQVYFLHNKVETIERIAQELKEWLPQARI
TVAHGQMRERELERIMGDFHHQRFNVLVCTTIIETGIDIPSANTIIINRADNFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPPKLITKDAKKRLDAISQLEDLGAGFTLATHDLEIRGAGEL
LGDDQSGQIEAVGFTLYMEMLDRAVTALKNGQDLNWDLSQNDQCEVELRLPALLPDDYIF
DVTTRLTMYKRIANCANQAEMRELQVELIDRFGLLPEQAKNLFEVQNLKIEAEQLGIKRI
EAGPKGGQVEFAETTKVNAAFLVSLLQSQPAIYRLEGANKLKFAVPSDSPEQRLSLIESL
LEQFTANATNS
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
gtgttactaaatttaccctgcccagttgatgctggcgaccaaaagcaagtaagcaactta
cccggtagcgcgcttgcttttgttattcaagaatacatcgcgcaacttgatgcgcccatc
gtgattttaactgaagatactcgtagcgcgctgcaaatagagcgagaagtaaacggctta
aaacctcagcgtgccttgcatttgctacccgactgggaaaccttgccttacgacactttt
tcaccgcaccaagatattgtatcgcaacgtattttaagccttaatcaactaagtcacgat
aaaaatagtgtgcttattgcgcccatagctacctggctgcaacgttgtgcgccggctgaa
tttttagccaagcacagcttgcagcttaaagtaggtcaaagcttaaacctcaatgctttt
aaagagcgtttagttagcgccggctatcagcacgttgatcaagtaatggagcacggagag
tttgctcttcgcggaagcttgctagatctctttcccatgggcagcaacctgccttttcgc
ttggacttttttgatgatgagctagacagcattcgcgagtttgatcccgatacccagcgt
agtgctgagcagcgcaaaagcattaccttattaccagcgcacgagttcccgaccgatgca
ggcggtatagaaaccttccgccaacagtggcgcgaccgttttgaaccaagccgagatgcg
ggctccatctatcaacaagtcaccaaaggaataatgccagcgggcatcgagtattatcta
cctttatttcatgctcataccgaaagcttaaccgaccaattagccaccaacacggtgatt
cttaaagtcggtgatttggatcatgccggtaagcaattttggagtgagttgacggaccgt
tatgaaaatcgacgctacgacaaagcgcggccgatcttaccgccagacgagttatatcaa
agcatcgagcaatgctttaaagaactaaaacagtttgcaggcgtaaaactgcataaaggc
ccggcccgtaatagccaaggtaagctgaatctagatgcccacgcgctgccagacttaagt
gtaaatcaccgtttgaacttgcctttgcaagcgctaagtcattacctagaacatcaccca
aaacctaaaacctgttttatcgccgagacagaaggccgtcgagaagccctaaaaaacttg
cttagcccgcttaaactgcgcatcaaagatgttgccagtatcagtgagtttttggcaagt
aaagacagcttggccatggtggtggcacctttagataagggctttgagctaaaagatccc
aatgttcagctaattagtgaagttgatttactcggcgataaagtacgagctaagcaacgt
aaagcatcaagtaaaacacttaatcctgatgtacttattcgcaatttagctgagctaagt
attggccagccagtggtacacatagaacacggggttggccgctatcatggtttaagcagc
tttgaaaacggtggtattaaaaccgagtttttaaccctagagtatgccaacgaagccaag
ctttacgtgccggtaaatgccctgcatttaattagtcgctactctggtgctaacgacgaa
acagcgcctctgcacaaactaggtaatgatcagtggcaaaaagccaaagccaaagctgct
gagaaaattcgcgacgtagccgccgagttactagaagtttacgcaaaacgcgccgccaaa
cccggctttggttatgagctagatgacgccgcctaccaacagtttgcagccgatttcccg
tttgaagaaaccgatgaccaacaacaggctattggcgcaaccttgcaagatatgcaaaca
cctaacgccatggaccgcttagtgtgtggtgatgtaggttttggcaaaacagaagttgcc
atgcgcgcagcatttgttgccgtaaatgctggcaaacaagtcgccgtactagtgccaacc
accctattggcccagcaacacttcgacaactttagcgatcgttttgccaattggccgata
gaagtcgcttcgttatctcgctttaaaaccactaaagaacaaaatgtagtcttaaaggat
ctcgctgcaggcaaagtggatgtaattattggtacccataaactgcttagcaaggatgta
aaatttgctgatttaggtttgttggtcatcgacgaagaacaccgctttggggtgcgccaa
aaagaacagattaaagcgatgcgtgctaatgtcgatattcttactcttaccgcgacgcca
attcctcgaaccttaaacatggcaatgagtggcatgcgtgatttatcgattatcgcgact
ccaccggcgaagcgcttggctgtaaaaacctttgttcgccagcacgacgccgcgctaatt
aaagaagcaattagtcgtgaagtgatgcgcggcggtcaagtttacttcttgcataacaaa
gtcgaaaccatcgaacgtatagctcaagagcttaaagaatggttgcctcaagcgcgaatt
accgtggctcatggccaaatgcgtgagcgcgaacttgaacgaatcatgggtgacttccac
caccaacggttcaatgtactggtgtgtaccactatcattgaaactggcatcgacatccct
agtgccaacaccatcattattaaccgcgccgacaattttggtttagctcaattgcaccaa
ttacgtggtcgtgttggccgctcgcaccaccaagcctatgcgtatttgctaacgccacca
cctaagttgatcaccaaagatgcaaaaaaacgtttagatgccatatcgcagctagaagat
ttaggtgccggctttacccttgctactcacgatttagaaattcgaggtgcaggtgaatta
ttaggtgatgaccaaagcggacaaattgaagcagtaggcttcacgctttacatggaaatg
ttagatagagctgtcacggcactaaaaaatggtcaagacctaaattgggacttaagccag
aacgaccaatgtgaagtagaactgcgcttacccgctctgctgcccgatgattacattttt
gacgtaaccacacgcttaaccatgtacaaacgcatcgccaactgtgccaatcaagcagaa
atgcgagagctacaagtggagttaattgaccgctttggcttattacctgagcaggcaaaa
aacctatttgaagttcaaaatctcaaaattgaagccgaacagctaggcattaaacgtatt
gaagctgggcctaaaggtggccaagttgagtttgccgaaaccacaaaagttaatgccgct
tttctagtaagcctgttacaatcacagccagctatttatcgcctagaaggtgccaacaaa
cttaagtttgcggtacctagcgatagcccagaacagcgattaagcttaatcgaatcatta
ttggagcaatttactgccaatgcgactaactcttaa
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