Agarivorans sp. OAG1: OAG1_18770
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Entry
OAG1_18770 CDS
T09980
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
agar
Agarivorans sp. OAG1
Brite
KEGG Orthology (KO) [BR:
agar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agar03019
]
OAG1_18770
Enzymes [BR:
agar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OAG1_18770
Messenger RNA biogenesis [BR:
agar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OAG1_18770
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
AAA_11
AAA_30
NACHT
nSTAND_NTPase5
T2SSE
TsaE
PhoH
Zeta_toxin
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
BEU03077
LinkDB
All DBs
Position
2095641..2099501
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AA seq
1286 aa
AA seq
DB search
MQSALSNYKQQISQALAKDRFRLQRQLSKLNADDVKNNSSQLLKFTQALERSSELSGRRR
ASIPSIEYPQHLPVAEQKQTIYEAVRDNQVVIIAGETGSGKTTQIPKICLELGLGSRGFI
GHTQPRRLAARSVAARIAEELNTPVGELVGYKIRFNDQIKNDSLIKLMTDGMLLAEMQQD
RFLSQYEVLIIDEAHERSLNIDFILGVLKQLLPKRPDLKVIITSATIDPQRFSKHFNDAP
VIEVSGRTYPVETRYRPLNEGEQTKDILEGLADAVDELYREKPGDILIFMNGEREIRDAT
DYLQKRQLRDTEVLPLYSRLSNAEQNKIFSSHRGRRIVLATNVAETSLTVPGIRYVIDPG
TARISRYSYRSKVQRLPIEAISQASANQRKGRCGRVAEGICIRLYSEEDFAGRAEFTDPE
ILRTNLASVILQMLGLRLGKLEDFPFIDMPDQRNIKDGLNLLEEIGALKQQHGKPSLSNL
GREVIKFPIDPRLARMMVAAKQFDCVQEMMVICAALSIQDPRERPNDRKQAADQKHARFV
DKDSDFSSYLLLWRYLQEQQKALSGNQFRKQCKQEFLAYMRIREWQDLVFQLSTVVKELD
YTVNQNEANYDAIHQAITAGLLSHLGFKDKEREFLGARNARFVVFPGSSQAKKPPKWVVA
AELVETSRLFARGVAKIQPAWLENQAGHLTKKSYSEPHWSTKQQAVMAYESVRLYGVALV
NKRLVNYGKIDPVVAREVFIRSALVEGLWPSKHAFFKQNQLLLDDAEALEQKQRRRDVRV
DDQVLYDFYAERLPEGIVSASHFNRWWKEASNKQADLLSFTKQMLYQHDASHITEKQYPD
QWQFEQVSVALSYVFEPGQSDDGVSAHIPLALLNQLDFTRFEWQIPAFREELISALIKSL
PKPIRRNFVPVPNYVQAFVQAVPHAEGNLLEVLTKQLLRMTGVKIPEDAWNLDSVADHLK
VNFKVINDQGKVVAQGRSYQSLQEKLQDQVEQSIAEIAPSSFAEQAKVTEWSFGELPELI
EEQRQGYQITAYPALVDEGKTVALKLFDKQEEAGWSQTRGLSKLLQLNIPSPLSYLQQHL
PNKAKLGLYFNPFGRVDVLLDDCCLAVIDKYSQLESVNTAEAFQALCDKVRAELATETLE
AVVLVEQILSLHYQINKQLKGKVGFDRVLAHADIKAQLNALVHKGFVREVGLQRLSDLQR
YLKAIERRLEKLAIDSHKDRLALQQIETATERYLELALPVYSQEGQELRWMIEELRVSLF
AQQLGTKYPVSLKRVLNHISELQKRK
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
ttgcagtcggctctctcaaattacaaacaacaaatatcacaggcattggctaaagaccgt
tttaggcttcagcgccagcttagcaagctaaatgcagatgatgtaaaaaacaacagctca
cagttactcaagttcactcaagcgcttgagcgctcaagtgagcttagcggccgccgacga
gcctcaatcccaagtatcgaatatcctcaacacctaccggttgcggagcaaaagcaaact
atttacgaagctgttcgcgataatcaagtggttatcattgcgggcgaaactggctcgggt
aaaaccacccaaatacccaaaatctgtttagaactagggttaggaagtcgcggtttcatt
ggccatacccagcctcgacgcttggctgcgcgtagtgtggcagcgagaattgctgaagaa
ctcaacactccggttggtgaattagtgggttacaaaatccgctttaacgatcaaatcaag
aatgacagcctaatcaaactgatgactgatggtatgttgttggcagagatgcagcaagat
cggtttttatctcagtatgaagtattgattatcgatgaagcccacgagcgcagcttaaac
attgattttattttaggtgtacttaagcagctattgccaaagcgacccgatttaaaggtc
atcattacttccgctaccatcgatcctcaacgtttttctaaacactttaatgatgccccc
gttatcgaagtttctggacgtacttatccggtagaaacacgttacaggccgctaaatgaa
ggcgaacaaaccaaagacatactggaaggtttagccgatgcagtagatgagttgtatcga
gaaaagcctggcgacattcttatttttatgaacggtgagcgagagattcgtgacgctacc
gactatctgcaaaagcgccaactgcgcgataccgaggtgttgccactctactcgcgttta
tctaatgccgagcaaaacaagattttttcatctcatcgcggtcgccgaatcgtactagct
actaacgtcgctgaaaccagtttaaccgtacctggtattcgctatgttatcgaccctggt
acagcacggattagccgttacagctatcgctctaaggtacagcgtttaccgattgaggcg
atttctcaagccagtgctaatcaacgtaaaggccgttgtgggcgtgttgccgaaggtatt
tgtattcgcttgtatagtgaagaagactttgcagggcgcgcagagtttaccgatcctgaa
attttgcgtactaacttggcctcagttattttgcagatgttgggattaaggctaggtaag
ttagaagacttcccgtttattgatatgcccgatcagcgcaatattaaagacggcttaaat
ctgctagaagaaattggagcgctaaagcagcaacatggcaaaccaagcctaagcaattta
ggccgcgaggtgattaagtttcctatcgacccgcgtttagccagaatgatggtcgccgct
aagcagtttgattgtgtgcaagaaatgatggtgatatgtgccgcgctatctattcaagat
ccgcgtgagcggcccaatgatcgtaagcaagcggctgaccaaaagcatgctcgctttgtc
gataaagactctgacttctccagctatttgttactttggcgttatttgcaagagcaacaa
aaagccttatcaggtaatcagtttagaaaacaatgtaagcaagagtttctggcttatatg
cgcattcgcgaatggcaggatttggtttttcagttatctacggtagttaaagagttggat
tacacggttaatcaaaacgaagctaactacgatgctattcaccaagcaataacggctggc
ttgctcagccacttgggtttcaaagataaagaacgagagtttttaggcgcgcggaatgca
cgctttgtggtgttccctggctcaagtcaggctaaaaagccacctaaatgggtggttgca
gccgaactcgttgaaacgtcccgcctatttgctagaggcgtagctaaaattcagcctgct
tggttagaaaaccaagcagggcatctaactaaaaagtcttacagcgaacctcattggtct
actaaacagcaagctgtaatggcttacgagagtgttcgtttatacggcgtagcgctagta
aacaaacgcttggttaactatgggaaaattgatcctgtggttgcccgcgaggtatttatc
cgctcagctttagtagaggggctgtggccatcaaaacatgcttttttcaaacaaaaccag
ctattgcttgatgatgctgaagccttagagcaaaagcaacgtcgccgagatgtgcgagtt
gatgaccaagtactctatgacttttatgcagagcgtttgccagaaggtattgtttcggca
agtcattttaatcgctggtggaaagaggccagtaacaagcaggccgatttacttagcttt
actaagcaaatgctttatcagcatgacgcaagccatatcactgaaaagcagtatcctgat
cagtggcagtttgaacaggtttctgtagccttaagctatgtgtttgaaccgggccaaagt
gacgacggcgtaagtgcacatattcctttagcgctgctgaatcaattagacttcactcgg
tttgaatggcaaattccagcgtttcgcgaagaactcattagtgccttgattaaatccttg
cctaaacctattcgccgcaattttgtgccggttccaaactatgtgcaggcctttgttcaa
gcagtgccgcatgcagagggcaatttgttagaggtactgactaaacaactgctaagaatg
accggagtaaaaatacctgaagatgcttggaatctagattcggtggccgatcaccttaaa
gttaattttaaagtgattaatgaccaaggcaaagtggttgcgcaaggccgctcttatcaa
agcttgcaagaaaaactacaagatcaggtagagcagagcattgctgaaattgccccaagc
tcttttgctgagcaggcgaaagtaaccgagtggagttttggtgagttgcctgagcttatt
gaagagcagcgccaggggtatcaaattaccgcttatccagccttggtggatgaaggtaaa
acagtcgcacttaagctgtttgataaacaagaagaagcgggttggagtcaaactcgcggc
ttaagcaaattgttacagctaaatattccttcacctttaagttacttgcagcaacattta
cccaataaagccaaattgggcttgtactttaatccctttggccgcgtggatgtattgctc
gatgactgctgtttagcggtgatcgacaagtactctcaacttgaaagtgttaacactgct
gaagcatttcaagccttgtgcgataaagttcgcgcagaactggctacagaaaccttagaa
gcggtagtgttagtggagcaaatattgagcttgcactaccaaataaacaaacagctaaaa
ggtaaagtaggtttcgacagagtattggcacatgccgatattaaagcacagctaaatgcg
ttggtgcataaaggttttgttcgtgaagtgggcctgcagcgtttaagtgatttacagcgg
tacctaaaagccattgagcgacgcttagaaaaactagccatcgattctcataaagataga
ttggcgctacaacaaatcgaaaccgctaccgagcgttacctagagttggcgttgccagtt
tatagccaagaagggcaagaactgcgctggatgattgaagagctaagggtgtctttgttt
gcccagcaattaggtactaaatatccagtatcattgaagcgggtacttaaccatattagt
gaattgcaaaaaaggaagtaa
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