Agarivorans sp. OAG1: OAG1_19580
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Entry
OAG1_19580 CDS
T09980
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
agar
Agarivorans sp. OAG1
Pathway
agar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OAG1_19580 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agar03019
]
OAG1_19580 (rne)
03009 Ribosome biogenesis [BR:
agar03009
]
OAG1_19580 (rne)
Enzymes [BR:
agar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OAG1_19580 (rne)
Messenger RNA biogenesis [BR:
agar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OAG1_19580 (rne)
Ribosome biogenesis [BR:
agar03009
]
Prokaryotic type
rRNA processing factors
OAG1_19580 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BEU03158
LinkDB
All DBs
Position
complement(2195340..2198441)
Genome browser
AA seq
1033 aa
AA seq
DB search
MKRMLINAMQLEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPMKEIAREYFPEGYVYQGRPSIKEVVKEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKEAMNGLELPNGMGLIVRTAGVGKSAEEL
QWDLKVLLNHWGAITDAAESKPAPFLIHQESNVIVRAIRDYLRRDVGEILIDNKTIYEQA
KKHIELVRPDFVNRVKRYEGEVPMFNHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALQTNLEASDEIARQLRLRDLGGLVVIDFIDMTPVKNQREVEN
RFREAVRQDRARVQVGRISRFGLLEMSRQRLRPSLGESSTHICPRCNGQGTIRDNESLAL
SILRLFEEEALKENTSEVHAQVPVPVAAYLLNEKRVAINKLEKRHNVRLVIIPNQHMETP
HYDVTRIRNGEETQETSYQLTAENPSPVYQPNQVAKEKIEAEQPVLQGFSAPAAPSAPAK
AAKPVKSAAEPSLIARIVAFFSAMFASEEKPAPKKQTRSKNNQRDKRNNRRNNQRNDKRN
DKRQERPERKERSDRNEGSNSNRRRKDQRNKPARDKVENETTQETKSQTKQHAPKEQQVK
ERRERRNLRKKVRVKAEKTNEAVAEQTAEQPVAEKPVSKKAEVASPKTEAPVAKTSDNSE
APKPKRRRRSSSSAGRKRFNDLPKAETNAQEAAIDSRYPEAEVKAESPVVETKAETPVAE
TKAEAPVAETKAEAPVAETKAEAPVAETKAEAPIAETKVEVPAVETKAEAPAVETKAEAP
VVETKAEAPVVETKAEAPVVETKAEAPVVETKAEAPVVETKSETPAVETKAEAPAVETKA
EAPAVETKAEAPAVETKAEAPAVETKAEAPAVETKAEAPAVEAKAEDIKLDAVKAEVKPK
RSNRGKLKPSKVEGKGNASAAMAKPAPVAATPSQPEEVVKKPYVRKPVTVGSRRVQSTSS
STSAQSPMSKPEL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaatgcaatgcagctagaagaaatgcgcgttgcattggtcgat
ggccaaaggctatacgatctagacatagaaagtcctggtcacgaacagaaaaaagcaaat
atatacaaaggcaaaattactcgcgtagagcctagtttagaagctgcatttgttgactac
ggcgcagagcgtcatggcttccttccaatgaaggaaatcgctcgcgaatacttcccagaa
ggctacgtctatcaaggacgtccaagcatcaaagaagtcgttaaagaaggccaagaagtc
atcgttcagatcgataaagaagaacgtggcaacaaaggcgctgcactaacgactttcatc
agcttagccggtagttatttagtattaatgccaaacaaccctcgtgcaggcggtatttct
cgtcgtatcgaaggcgatgaacgcacacagcttaaagaagcgatgaatggtctagaattg
cctaacggcatgggcctaatcgttcgtacagctggcgtgggtaaatcggcagaagagctt
cagtgggacttaaaagtactacttaatcactggggtgcaattaccgatgccgcagagtct
aagccagcacctttccttatccaccaagaaagcaacgtaattgttcgtgcaattcgtgat
tatttacgtcgcgatgttggcgagatcctcatcgataataaaactatctatgagcaagct
aaaaagcacatcgaactggttcgtcctgacttcgtaaaccgtgtaaaacgttacgaaggc
gaagtgccgatgttcaaccactaccaaattgaatcgcaaattgaatctgctttccaacgc
gaagttcgtcttccatcgggtggttcaattgttatcgatccaaccgaagccttaacttca
attgatattaactcggctcgcgcaactaagggcggagacattgaagaaacagcgcttcaa
accaacctagaagcatcagacgagattgctcgtcaacttcgcttgcgtgacttaggtggt
ctagtagttatcgacttcatcgatatgacgccagttaaaaaccagcgcgaagtagaaaac
cgcttccgtgaagccgttcgtcaagatcgcgctcgcgttcaagttggtcgcatttctcgc
ttcgggctactagaaatgtctcgtcaacgtttacgtccgtcattaggtgagtctagcact
catatttgtccacgttgtaacggacaaggtactattcgtgataacgagtctctagcattg
tctattcttcgtttattcgaagaagaagcgctaaaagaaaatacctctgaagttcatgct
caagttcctgtgccggtagcagcttacttgcttaacgaaaagcgtgtagcaatcaacaag
cttgagaaacgccataacgttcgattagtgatcattcctaaccaacatatggaaacacct
cactacgacgttactcgtattcgaaatggtgaagagactcaagagactagctatcagctt
actgctgaaaacccatctccggtttatcaacctaaccaagtggctaaagaaaaaattgaa
gctgagcagccagtgttgcagggctttagtgctcctgctgcacctagcgccccagccaaa
gcagccaagcctgttaagagtgctgcagagccttctttaatcgcacgtattgttgcattc
tttagtgccatgtttgctagcgaagaaaagccagcaccaaagaaacaaacacgcagcaag
aacaatcagcgtgataagcgtaataatcgtcgcaataatcaacgtaatgacaaacgcaac
gacaagcgccaagaacgcccagagcgaaaagaacgcagcgatcgcaacgaaggttctaac
agcaaccgccgccgcaaggatcagcgtaacaaacctgctagagataaagttgaaaatgag
actactcaagaaactaagtctcaaaccaagcaacatgctccaaaagaacagcaagttaaa
gagcgtagagaacgtcgtaacttgcgtaaaaaagtaagagtaaaagccgagaaaaccaac
gaagcagttgcagagcaaactgctgaacagccagttgctgaaaaaccagtatctaaaaaa
gcagaagtagcttctccaaaaactgaagctccagtggctaaaacgagcgataactcggaa
gcaccaaagcctaaacgtcgtcgtcgctcatcgagcagcgcaggtcgtaaacgctttaat
gacttgccaaaagcagagactaacgctcaagaagcagctatcgattctcgctatccagaa
gcagaagtgaaagctgaatctcctgtagttgaaactaaagctgaaactcctgttgctgaa
actaaagctgaagctcctgttgctgaaactaaagctgaagctcctgttgctgaaactaaa
gctgaagctcctgttgctgaaactaaagcagaagcacctattgctgaaactaaagtagaa
gtgcctgcagttgaaactaaagctgaagcacctgcagttgaaacaaaagcagaagcacct
gtggttgaaactaaagctgaagcacctgtagttgaaactaaagctgaagctcctgtagtt
gaaactaaagctgaagctcctgtagttgaaactaaagctgaagctcctgtagttgaaact
aaatcagaaacaccagcagttgaaactaaagctgaagcaccagcagttgaaactaaagct
gaagcaccagcagttgaaactaaagctgaagcaccagcagttgaaactaaagctgaagca
ccagcagttgaaactaaagctgaagcaccagcagttgaaactaaagctgaagcaccagca
gttgaagctaaagccgaagacattaagcttgatgcggttaaagccgaagtgaaacctaaa
cgcagtaatcgcggtaagctaaaacctagcaaagttgaaggtaaaggtaacgcttcagct
gctatggcaaaaccagcacctgttgctgcaacgcctagccagccagaagaagtagttaaa
aaaccttacgtacgtaagcccgtaacagttgggtcacgacgtgttcaatctactagttct
agtacatctgcgcagagccctatgagcaagccagaattgtag
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