Agarivorans sp. OAG1: OAG1_19820
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Entry
OAG1_19820 CDS
T09980
Symbol
rnb
Name
(GenBank) exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
agar
Agarivorans sp. OAG1
Brite
KEGG Orthology (KO) [BR:
agar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
agar03016
]
OAG1_19820 (rnb)
Enzymes [BR:
agar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OAG1_19820 (rnb)
Transfer RNA biogenesis [BR:
agar03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
OAG1_19820 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
Rho_RNA_bind
S1CSD-TOTE-2
tRNA_edit
Motif
Other DBs
NCBI-ProteinID:
BEU03182
LinkDB
All DBs
Position
complement(2219935..2221872)
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AA seq
645 aa
AA seq
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MEAFMLKDNPLLAQLKQQIRETIPTVEGVVKATEKNFGFLQTDNKKSYFISPPMMKKLIH
GDRISAAIRENNGKEAAEPETLVEAALDTFVARVKFVDKRTKLQVDHPLINQLLSAKVIK
DSGFSIKQGDWVLARLVKHALKEQHFQAEIFEFIAESDDNFARWKATTKKHQLAWDQPEL
TEDLAIIDQEVERRDLTNELFFTIDGENTKDMDDAVSITREAEHWKLKVAIADPSAYINS
ESELEKAAKQRAFTLYLPARTVPMMPSKLANEHCSLVADQVRPALVCEMLIGLDGELQEN
AEFYLATVQSKHRLNYNQVSDFIEQKTTELATNAELAEALQQLNLFSEQRNQWRAENTSV
FGDQADYEFVLDNKGQVIDILRQSRRSANRMIEEAMVAANICGGRFLDEKLGFGVFACHS
GFKEEKLDGLVELLAKFELPVEREKLNDLDYFCQLRRTIAATGDKCLDQLVKRHFNFGVY
NEKCLPHFGLGEAKYATWTSPIRKYSDLLNHRLIKSVINGETPNSPLSEELSEHLSDNRK
KQKFAEREMANYLYCEYFAEQDPNTCLLAEVSNINRGGLNIRLVNSGASAFVPKTKLAGK
DEELTIESELGRLSTKNKQYSVGDTISVKIVEVKKLQQSIVAAPC
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggaagcctttatgcttaaagataaccctctattggctcaactaaagcagcaaattaga
gagaccattcccactgttgaaggtgtagtaaaagctactgagaagaacttcggtttcctt
caaacagacaacaaaaaaagctatttcatctcacccccaatgatgaaaaagctaattcac
ggcgaccgaattagcgcagctattcgcgaaaataacggtaaagaagcagcagagccagaa
acactggtggaagccgctttagatacctttgtggcccgtgtaaagtttgttgataaacgc
actaagctgcaggttgaccatccattgatcaaccagttgttaagtgcaaaagtgataaaa
gatagtggattctcaatcaaacaaggtgattgggtgttagctagactggttaaacacgca
cttaaagaacaacacttccaagccgagatcttcgagtttatcgcagaaagtgacgataac
tttgcccgatggaaagctactactaaaaagcaccaattagcttgggaccagcctgaactc
actgaagacctggcgattattgatcaagaagttgagcgtcgtgatctaaccaacgagttg
tttttcactatcgacggtgaaaataccaaagatatggatgatgcagtctcaatcacgcgc
gaagcagaacattggaagttaaaggtcgctatagcggatcctagtgcttacattaacagt
gaaagcgaacttgaaaaagctgccaaacaacgagcattcactttgtacttaccagcacgc
actgtgccgatgatgccaagtaagttggctaacgaacattgctcgctagtagcagatcaa
gttcgtccagccttagtatgtgaaatgctgattggacttgatggtgagttacaagaaaat
gctgagttttacttagccactgttcagtccaaacatcgcctaaactacaatcaggtgtct
gactttatagaacaaaagaccactgaactcgcaacaaacgctgagctagctgaagcttta
caacaacttaacttgtttagtgagcaacgtaatcaatggcgcgcagagaacacctcggtg
tttggcgatcaagcagactacgagtttgtcttagataataaaggtcaggttatcgatatt
cttcgtcaatctcgtcgtagtgcaaaccgtatgattgaagaagcaatggtggcagccaac
atttgtggcggacgcttcctagatgaaaaactcggctttggagtgtttgcatgtcattct
ggttttaaagaagagaagctagacggactagtagagctactggccaagtttgagttaccg
gttgagcgagaaaagctcaatgacctcgactacttctgccaactaagaagaaccatcgca
gcgactggcgataaatgcttagatcagttggtaaaacgccactttaattttggtgtttac
aatgaaaagtgcttgcctcactttggtttaggtgaagctaagtatgcaacttggacctct
ccaatacgaaaatacagcgatctgttaaatcatcgccttattaaatcggtgattaatggc
gaaacacctaattcgccattatctgaagagctttctgagcatctaagtgataatcgcaag
aagcaaaagtttgctgaacgagaaatggccaactacttgtattgcgagtattttgcagaa
caagatccaaatacatgtttgttggcagaagttagcaatataaaccgtggtggccttaat
attcgtctagttaacagtggtgcctcggcttttgtaccaaaaaccaagctagctggtaaa
gatgaagagctcaccatcgaaagtgagttgggccgtttatccactaaaaacaaacaatat
agcgtgggtgataccatctctgtaaagattgtagaagtgaaaaagctacaacaatcgatc
gttgcagccccctgttag
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