Agarivorans sp. OAG1: OAG1_36480
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Entry
OAG1_36480 CDS
T09980
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
agar
Agarivorans sp. OAG1
Pathway
agar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OAG1_36480 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agar03021
]
OAG1_36480 (rpoC)
03400 DNA repair and recombination proteins [BR:
agar03400
]
OAG1_36480 (rpoC)
Enzymes [BR:
agar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OAG1_36480 (rpoC)
Transcription machinery [BR:
agar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OAG1_36480 (rpoC)
DNA repair and recombination proteins [BR:
agar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OAG1_36480 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
BEU04848
LinkDB
All DBs
Position
complement(4116241..4120446)
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFEGIKIGLASPDQIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQSKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESFVVTEPGMTSLERGQMLTEETYLDSLEEYGDEFEAKM
GAEAVLALLRHLELDQEIEVMREELQTTNSETKRKKTTKRLKLMEAFRDSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREGGEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RSLMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTRERVNAEGEGMYLSGPKEAEKLYRAK
QASIHARVNVRITEVVVAEDGSKIEKTEIKQTTIGRAILWLIVPKGLPFDLVNQSMGKKQ
ISGLLNTCYRKLGLKHSVIFADQLMYTGFHYATLSGASVGINDMVIPDAKKDIVEEASDE
VSEIQEQFLAGLVTAGERYNKVIDIWASANEKVSKAMMDNLSTETVINKDGEEESQDSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTETDCGTEDGIIMTPHIEGGDVVEPLRERVL
GRVLVGDVIKPGTENEVLLKDKTLLDEKLCDLLEENSVDTVKVRSVISCANDFGVCALCY
GRDLARGHLVGRGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAENSIQVKNAGTIK
LHNAKVVTNSEGKLVVTSRSTELTIIDEMGQTKESHKLQYGAILEVVDGGAVTSGDTVAN
WDPHTHPIITEVPGRVKFIDMVEGVTVSRQTDELTGLSSIHVMDPNERPGAGKEMRPMVK
LVDGSGNDVLIAGTDIPAQYFLSAKAIVNLEDNAEVGVGDAIARIPQESSGTKDITGGLP
RVADLFEARQPKEPAILAEITGTISFGKETKGKRRLVITPAEGDAYEEMIPKWRNLNVFE
GEKVAKGEVIADGPESPHDILRLRGISPVSNYIVNEVQDVYRLQGVKINDKHIETIVRQM
LRKCLILDAGDSSFLLGEQAEVARVNIENRQLEAEGKRPAVYRRELLGITKASLSTESFI
SAASFQETTRVLTEAAVGGKQDELRGLKENVIVGRLIPAGTGYAYHENRRNQTEAPAPIT
ADEAADNLAALLNAAPGGETE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttacttaagtttcttaagcaacaaagcaagaccgaagagtttgaaggcatt
aaaattggcctagcttcaccagaccagatccgcagttggtcgtttggtgaggtgaagaaa
ccagagacgattaactatcgtacttttaagcctgagcgtgacggtttattctgtgctcgt
attttcggcccagtaaaagattacgaatgtttgtgtggtaaatacaaacgtttgaaacac
cgtggtgttatttgtgagaagtgtggcgtagaagttacccaatctaaagttcgtcgtgat
cgtatgggtcacatcgaattagcttctcctgtagcgcacatctggttcttaaaatcacta
ccatcgcgtattggtttattactagatatgactttacgtgatattgaacgagttctttac
ttcgaatcatttgttgtgactgagcctggcatgaccagcttagagcgcggtcaaatgctt
accgaagaaacttacttggattcacttgaagagtacggtgacgagtttgaagctaaaatg
ggtgctgaagctgtattagctttattgcgtcatttagagcttgaccaagaaatcgaagta
atgcgcgaagagttacaaactactaactctgaaactaagcgtaagaagaccactaagcgt
cttaagcttatggaagcgttccgcgattcaggtaacaaacctgagtggatgattatgacc
gtattaccggttcttccaccagatttacgcccactagtaccactagatggcggccgtttt
gctacgtctgatttgaacgatttataccgtcgtgtaatcaaccgtaacaaccgtttgaag
cgtctattagacctagctgctccagacatcattgtgcgtaacgaaaagcgtatgctgcaa
gaagcagtagatgctttgttagacaatggtcgtcgtggtcgtgctattactggttctaac
aaacgtccgcttaaatctttggctgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctaggtaagcgtgtagattactcaggtcgttcggtaattaccgttggtccaaca
ctgcgtctacaccagtgtggtcttcctaagaaaatggcacttgagctattcaaaccattc
atctatggcaagctagagctgcgtggtcttgcgactacaattaaagctgctaagaaaatg
gttgagcgcgaaggcggtgaagtgtgggatattcttgaagaggttatccgcgaacaccca
gtattacttaaccgtgcaccaaccttgcaccgtttgggtattcaagcctttgagcccgtg
ctaattgaaggtaaagcaattcaattacacccgctagtgtgtgcggcttataacgccgac
ttcgatggtgaccaaatggcggtacacgtaccgttgaccctagaagcacagttagaagca
cgttcgttgatgatgtcgaccaacaacgtactatcaccagcaaacggtgagcctattatc
gttccttcgcaagacgttgtattgggtctgtactacatgactcgtgaacgtgttaacgct
gaaggtgaaggtatgtacctttctggccctaaagaggcagagaagttataccgtgctaaa
caagccagtattcacgcacgtgtaaacgtacgtattaccgaggttgttgtagcagaagac
ggctctaaaatcgaaaaaactgagattaagcaaactaccattggtcgtgccattttatgg
ttaattgtacctaaaggtttgccatttgatttagttaaccagtcaatgggtaagaagcaa
atctcaggattgctaaacacctgttaccgtaaactaggtcttaagcactcagttattttt
gctgaccaattaatgtacaccggtttccattacgcaaccttgtctggtgcctctgtaggt
attaacgacatggttatccctgatgctaagaaagacatcgtggaagaagccagtgacgaa
gtaagcgaaattcaagagcagttcctagctggtttggtaaccgcgggcgagcgttacaac
aaagtaatcgatatttgggcttcggctaacgaaaaagtatcgaaagcgatgatggacaac
ttgtctactgagaccgtaattaacaaagatggcgaagaagagagtcaagactcgttcaac
agcatctttatgatggccgactctggcgcacgtggtagtgctgctcagattcgtcagcta
gctggtatgcgtggcttgatggctaaaccggatggttcgattatcgaaaccccgattgtg
gctaacttccgcgaaggtttgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtttggccgataccgcattgaagactgctaactctggttacttaacacgtcgtcta
gtagatgttgcacaggatttggttgttaccgaaactgactgtggtaccgaagacggtatt
atcatgacgcctcacattgagggcggtgatgttgttgagccattacgtgagcgtgttctt
ggtcgtgttctagtaggcgatgtaattaagcctggtactgagaacgaagtactgcttaaa
gacaaaacactacttgacgagaaactgtgtgaccttcttgaagagaactcagtagatacc
gttaaagtacgctcagtaattagctgtgctaacgactttggtgtttgtgctctttgttat
ggtcgtgacctagctcgtggtcacttggttggtcgcggtgaagcggttggtgtagttgca
gctcaatcaattggtgagccaggtactcagcttaccatgcgtaccttccacattggtggt
gcggcatcgcgtgcagcagcagaaaacagcattcaagttaagaacgcaggtactattaag
ctacacaacgctaaagtagtaactaacagcgaaggcaagttggttgtaacctctcgttct
actgaattgaccattattgatgaaatggggcaaaccaaagaaagccacaagcttcaatac
ggtgcaatactagaagtagtagatggtggtgcggttacctctggcgacacagttgctaac
tgggacccacatacacacccaattattactgaagtaccggggcgcgttaagttcatcgac
atggttgaaggcgtaactgttagccgtcaaactgatgaactaactggtctttctagtatt
cacgttatggaccctaacgagcgccctggcgctggtaaagaaatgcgtccaatggtgaaa
ttggtagacggttctggtaacgacgtacttattgccggtactgatattccagctcagtac
ttcttatctgcaaaagcgattgtaaacttagaagataatgctgaagtgggtgttggtgat
gcgattgctcgtatcccacaagaatcaagcggtactaaagatattaccggtggtctacct
cgcgtagccgacttgttcgaagctcgtcagcctaaagagccagctattttggcagaaatt
accggtactattagtttcggtaaagaaaccaaaggtaagcgccgcttggtgattactcct
gctgaaggcgatgcttacgaagaaatgattcctaagtggcgtaacctaaacgtgtttgaa
ggtgagaaagtggctaaaggtgaagtaattgccgatggtccagaatcaccacatgacatt
ttacgtttgcgtggcattagccctgtttctaactacatcgtaaacgaagtacaagacgta
taccgtttacaaggtgtgaagattaacgataaacacattgaaactatcgtgcgtcaaatg
cttcgtaagtgtttgattctagatgctggtgattctagcttcttgctaggtgagcaagct
gaagttgcccgtgtgaatattgagaatcgtcaattggaagctgaaggcaaacgccctgcg
gtataccgtcgtgagttactaggtattactaaggcgtcactatctacagagtcgtttatt
tctgcggcttcgttccaagaaactactcgtgtgcttaccgaagcagcagtgggtggtaaa
caggacgaactacgcggtcttaaagagaacgttattgttggtcgcttgattcctgctggt
actggttatgcctaccacgagaatcgtcgcaaccaaactgaagcgccagctccaattact
gcagatgaagcagctgataacttagctgctctactaaatgcagcccctggcggcgaaaca
gagtag
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