Agarivorans sp. OAG1: OAG1_40220
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Entry
OAG1_40220 CDS
T09980
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
agar
Agarivorans sp. OAG1
Pathway
agar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OAG1_40220 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agar03019
]
OAG1_40220 (rhlB)
Enzymes [BR:
agar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OAG1_40220 (rhlB)
Messenger RNA biogenesis [BR:
agar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OAG1_40220 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
BEU05222
LinkDB
All DBs
Position
4547061..4548350
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AA seq
429 aa
AA seq
DB search
MSKTHLTELRFAELGLQDKVLTALEQHGYHNCTPIQAQSLPILTTGKDIAGQAQTGTGKT
LAFLVATFNHLLTTAVPETRQQNQPRAIILAPTRELAIQIHNDARLLAKATGLKLGLVYG
GEGYASQRATLDEGVDILIGTTGRMIDYFKQGAFSLNAVQAMVLDEADRMFDLGFIKDIR
YLMRRMPEPKARLNMLFSATLSFKVKELAFEHMNEPEHVIVEPEQMTGARIQEELFYPSN
DDKMALLQTLIEEEWPERAIIFANTKHRCEDIWGHLSADKHRVGLLTGDIPQRKRVQILE
QFTEGKLDVLVATDVAARGLHIPSVTHVFNYDLPDDAEDYVHRIGRTGRAGASGHAISLA
CEEYVFNLPAIEEYIKHPVPVSQYDTEALMRDLPKATRVHRTKGNNSRGGNRKNSRGNSG
HSNQRRQRH
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacatttaacagaactccgatttgccgagttaggactgcaagataaggta
ttaaccgccttagagcagcacggctatcacaattgcaccccaatccaagcgcaaagcctc
ccaatcttaaccactggtaaagatattgcgggccaagctcagaccggtacggggaaaact
ctagcctttttagttgctacgtttaatcatttgctaaccacagcagtgcccgaaacgcgc
caacaaaatcaaccgcgtgcgattattctcgcaccaactcgcgaattagctattcaaatc
cataacgatgctcgcttacttgctaaagcaacgggtctcaagttgggtttggtctatggc
ggcgaaggttatgccagtcagcgtgccactttagatgaaggtgtagacattcttatcggt
acaaccgggcgaatgatcgactacttcaaacaaggtgcatttagcttaaatgccgtgcaa
gccatggtattagatgaagctgatcgcatgttcgaccttggtttcattaaagacattcgt
tatttaatgcgccgcatgccagagccaaaagcgcgtttaaacatgctgttctcagccacg
ctttcttttaaggtaaaagaattagcgtttgagcatatgaacgaaccggaacacgttatt
gtagagcccgaacaaatgaccggcgctcgcattcaagaagaactgttttacccgtctaac
gacgacaaaatggccttgttgcaaactctaatagaagaagagtggccagaacgcgccata
atttttgctaatactaaacaccgttgtgaagacatttggggccacttaagtgccgacaaa
catcgcgttggtttgctaaccggtgatataccgcagcgtaagcgagtgcaaatacttgaa
cagttcaccgaaggtaaacttgacgtattagtcgctaccgatgttgcagcccgaggcttg
cacattccgtcggtaactcatgttttcaactatgacttaccagacgatgccgaagattac
gtgcaccgtattggccgaacaggtcgtgctggcgcaagtggccatgccatcagccttgcc
tgtgaagaatacgtatttaacttacctgccattgaagagtacattaagcacccagtgccg
gtaagccaatatgataccgaggcgctaatgcgtgatttacccaaggcaacgcgagtccat
cgcaccaaaggtaataatagccgtggcggtaaccgcaaaaatagtcgcggtaatagcggt
cactctaaccagcgacgccagcgtcactaa
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