Agathobaculum sp. NTUH-O15-33: RWV98_07845
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Entry
RWV98_07845 CDS
T09495
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
agat
Agathobaculum sp. NTUH-O15-33
Brite
KEGG Orthology (KO) [BR:
agat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
agat03016
]
RWV98_07845
Enzymes [BR:
agat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RWV98_07845
Transfer RNA biogenesis [BR:
agat03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RWV98_07845
Prokaryotic type
tRNA splicing ligases
RWV98_07845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WNX86173
LinkDB
All DBs
Position
complement(1524074..1525276)
Genome browser
AA seq
400 aa
AA seq
DB search
MIPVKGAYNTALCFCAALDQTAEQQIRAVCDQPAFADSRIRIMPDVHAGMGCTIGTTMTI
SDKIVPGMVGVDIGCGMETVRLLEREIDLDRLDAHIRAAIPCGREIRATPHAFADLIDLT
ALHCAPAVNLARAQRSIGTLGGGNHFIEIDRGEDGALYLVVHSGSRHLGSEVAKFYQDEG
RRALWGGARHQIESTIAQMKAAGREHEIEKVIRTLKKEHPVDLPRDLAYVEGRLFHEYID
DMRIIQRFAALNRKAMVDSLLSGMGLTCAEAFTTIHNYIDTDAMILRKGAVSAKAGEKLL
IPINMRDGSLICTGLGNKEWNYSAPHGAGRLMSRKEAFQQLDMDVYRAEMAGIYSTCVLP
DTLDESPMAYKRMDDIISQIGPTADIVERIKPVYNFKASD
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgatacctgtcaagggcgcctataataccgcactgtgcttttgcgccgcgcttgaccag
accgccgagcagcagatccgcgcggtttgcgaccagcccgcttttgcggacagccgtatc
cgcatcatgcccgatgtgcacgccgggatgggttgcacaatcggtacgaccatgactatt
tccgataagatcgtgcccggcatggtcggtgtggatatcggctgcggtatggagactgtt
cgccttttggaacgcgagatcgatcttgaccggttggatgcgcatatccgcgccgcgatc
ccctgcggccgcgagattcgcgccacgccccatgcgttcgccgatttgatcgacttgact
gcgctgcactgcgcgcctgccgtcaatttggcgcgcgcgcaacgcagtatcggcacgctg
ggcggaggcaaccattttatcgaaatagatcgcggtgaggacggcgcgctttatctggtc
gtccattcgggcagccgccaccttggcagcgaggtggcaaagttttatcaggacgagggc
cgccgcgcactgtggggcggcgcgcgccatcaaatcgaaagtaccattgcccaaatgaaa
gccgccgggcgcgaacacgaaatcgaaaaagtcatacgaacgctgaaaaaagagcatccg
gtcgacctgccgcgcgatctggcttacgttgaaggccgtttattccatgaatatatcgat
gatatgcgtatcatacagcggtttgccgcgctcaaccgcaaggcgatggtcgattccttg
ctatccggcatggggcttacctgcgcggaagcctttaccaccatccacaattatatcgat
accgacgccatgatcttgcgcaagggcgcggtatccgccaaagcgggtgaaaagctgctt
attcccatcaacatgcgcgatggcagcctgatttgtaccggcctaggtaacaaggaatgg
aactactccgccccgcacggcgcaggccgcctgatgagccggaaagaagcctttcagcaa
ctcgacatggatgtttaccgcgcggaaatggcgggtatttattccacctgcgtgcttccg
gatacgctggacgaatcgcccatggcctacaaacgcatggacgatatcatcagtcagatc
gggccgacggcggatatcgttgaacggataaagccggtgtataattttaaagcctccgat
taa
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