Agathobaculum sp. NTUH-O15-33: RWV98_10490
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Entry
RWV98_10490 CDS
T09495
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
agat
Agathobaculum sp. NTUH-O15-33
Pathway
agat02020
Two-component system
agat02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
agat00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RWV98_10490 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RWV98_10490 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agat03021
]
RWV98_10490 (rpoN)
Transcription machinery [BR:
agat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RWV98_10490 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
MarR_2
HTH_5
HTH_24
HTH_Tnp_ISL3
Sigma70_r4
HTH_3
HTH_11
HTH_36
Motif
Other DBs
NCBI-ProteinID:
WNX86642
LinkDB
All DBs
Position
2088811..2089962
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AA seq
383 aa
AA seq
DB search
MEPPEYTETTSILPTDFHPYSGEASYRDIPAPEHASLREHLLRQLNERTMNAQEWRCMQF
LIDSLDDQGFLDLSAQEAAALLRITPALAKQCVARLQSLDPPGVGARDLGDCLYLQLVRL
GQQNESYHTLLHTCLEDLAAGRFHKITLRTGISKLVQHRCLQAIRQLDPHPAAAFDYMET
RFVTPDLICEYTNGHWSVQINDRWMGTVGISALYDRLLRADGRPEIQAYYTERLARAQLV
LSSIEKRRATLTALVLHVVRHQSAYLLADDPLRPLSFRGLAEEMDISESTISRAVRDKYI
QTPRKTILLRHLFTTALPAVKETSQAQALQVLQDLIASEDKRAPLSDQALMERLQHEGIT
LARRTVAKYRESLGIPGAAQRKR
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
ctggagccgccagaatacaccgaaacaacatcaatcctgccgacagatttccatccctac
tccggcgaagcgagctaccgggatattcctgcgcccgaacacgcctctctgcgcgagcat
ctgctccgtcaactcaatgaacgcacgatgaacgcacaggaatggcgctgcatgcagttt
cttatcgattcgcttgatgatcagggctttcttgatctatctgcgcaggaagcggcggcg
cttttgcggataacgcccgcgcttgcaaagcaatgcgtcgcccgtttacagtcgctcgat
ccgccgggcgtcggcgcgcgcgatctgggagactgtctttatttgcagttggtccgtctc
ggacagcaaaacgaatcctatcataccttgcttcacacctgtcttgaggatttggccgct
gggcggtttcacaaaatcacacttcgcacgggaatctccaagctggtccagcaccgctgc
ctacaggcgatccgccaattagatccgcatcccgccgccgcgtttgactatatggaaacc
cggttcgtcacgccggacttgatctgcgaatacacaaacggtcattggtcggtgcagatc
aatgaccggtggatgggaaccgtcgggatctccgctctatacgatcgcctgctgcgcgcg
gacggccgtcccgaaattcaggcctactatacggaacgcttggcgcgggcccagcttgtt
ttgtccagcattgaaaaacggcgcgccacactgactgcgcttgtgcttcacgtggtgcgg
catcaaagcgcatatctgctggcggatgatccgctccgcccactttcgtttcgcgggctg
gcggaagaaatggatatcagcgaatcgacgatcagccgtgccgtgcgtgataaatacatt
caaacgccgcgcaaaaccatactgctgcgtcacttatttacgacagcgctgcctgccgtt
aaagaaacgagtcaagcgcaggcgctgcaggtgctgcaagacctgatcgcttccgaggac
aaacgcgctcctctcagtgatcaggcactcatggagcgcctgcaacacgaagggataacg
ctggcgcggcgtaccgtcgccaaatatcgcgaatctctcggcattccgggcgccgcccaa
cggaaacgataa
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