Agathobaculum sp. NTUH-O15-33: RWV98_11230
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Entry
RWV98_11230 CDS
T09495
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
agat
Agathobaculum sp. NTUH-O15-33
Pathway
agat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RWV98_11230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agat03019
]
RWV98_11230
Enzymes [BR:
agat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RWV98_11230
Messenger RNA biogenesis [BR:
agat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RWV98_11230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WNX83183
LinkDB
All DBs
Position
complement(2257619..2259253)
Genome browser
AA seq
544 aa
AA seq
DB search
MKFSELGIEKNILKALNEAGYDEPTPIQQKAIPPLIDGHDIMGCAQTGTGKTCAFAVPII
QRLEAQTAKGRAPRALILTPTRELALQIFENICQYARYTGRTAAVIFGGVSQVPQVDAIK
RGADILIATPGRLWDLMGQGHVTLGSIECFVLDEADRMLDMGFFPDVKRIIKFLPEKRQT
MLFSATIPKEIAALADSLLHTPVRIAITPSAKPVEKIEQKLYFVEKAEKRELLAEVIRRS
NVAQTLVFTRTKHGADRVARDLNRAGIKSKAIHGDKSQNQRQTALSDFKACKIAALVATD
IAARGIDINELPLVINFELPNIPETYVHRIGRTGRAGQEGTAISFCDHTERPYLADIEKL
IGRAIPVEGEVPHVPKEGEETARRAPAPRGRTRKPVSENATAEEVAADVQRQKAQKQRRQ
PAAKAAAPAAGQTARRAPAAEAREEQRAKAAAPRRSRSSSAGARGRGRAPYAKYEQNEPR
YDAHTPARTGELSEAAAARIRQKVAAAMAARTEAAPAVKQAGGQPAASSARPARSRSFRG
HRKG
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcagtgaattaggaatcgaaaagaacattttaaaggccttgaacgaggcgggc
tatgacgagccgacgccgatccagcaaaaggcgatcccgccgctgatcgacgggcacgac
atcatgggatgcgcccagacgggcacgggcaagacctgcgcgtttgccgtgccgatcatt
cagcggctggaggcgcagaccgccaagggccgcgcgccgcgcgcgctcatcctaacgccg
acgcgcgagctggctttgcagattttcgagaatatctgccaatacgcgcgctatacgggc
cgcacggccgctgttattttcggcggcgtgtcgcaggtgccgcaggtggatgcgattaag
cgcggcgcggatattctgatcgccacgccgggccgcctttgggacctgatggggcaggga
cacgtaacgcttggctcgatcgaatgcttcgtgctggatgaggccgaccggatgctggat
atgggctttttcccggatgtcaagcgcatcatcaagttcctgccggaaaagcggcagacc
atgctgttctccgccaccatcccgaaggagatcgcagcgctggcggacagcctgcttcat
accccggtgcgcattgcgatcaccccgtcggccaagccggttgaaaagatcgagcagaag
ctgtattttgtggaaaaagcggaaaaaagggaactgctggcggaagtgatccgtcgaagc
aacgttgcgcagacgctggtctttacccgcaccaagcatggggccgaccgcgtcgcgcgc
gatttgaaccgcgcgggcatcaagtccaaggcgatccacggcgataaatcgcagaaccag
cgccaaaccgcgctgagcgacttcaaggcgtgcaagatcgcggctctggttgcgaccgat
atcgccgcgcgcggcatcgatatcaatgaattgccgctcgttatcaattttgaactaccc
aatattccggaaacctatgtgcaccgcattggccgcacgggccgcgccgggcaggaaggc
accgccatttccttctgcgaccataccgaacggccctatctggccgatattgaaaagctg
atcggccgggcgatcccggtcgagggcgaagtgccgcatgtgccgaaggagggcgaggag
accgcgcgccgcgcgcccgcgccccgcggtaggacccgcaagccggtttcggaaaacgcc
acggcggaagaggtcgcggcggacgtccaacgccaaaaagcgcagaagcagcgccgccag
ccggccgcaaaggccgcagctcccgcggcgggccagaccgcccgccgcgcacccgccgcg
gaggcgcgagaggaacagcgcgccaaagcggccgcgccgcgccgctcgcgttcgtcttcg
gcaggcgcgcggggccgtggacgcgccccctatgcaaaatatgaacagaacgaaccccgg
tacgacgcgcacacccccgcccgcaccggcgaactgagcgaggcggcagccgcgcgcatc
cgtcagaaggtcgcggcggctatggcggcccgtacggaagcggcgcccgccgtcaaacaa
gccggcggacagcctgcggcttcctccgcaagaccggcgcgttcgcgttcgttccgcggc
caccgcaagggctaa
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