Agathobaculum sp. NTUH-O15-33: RWV98_12455
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Entry
RWV98_12455 CDS
T09495
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
agat
Agathobaculum sp. NTUH-O15-33
Pathway
agat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RWV98_12455 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agat03021
]
RWV98_12455 (rpoC)
03400 DNA repair and recombination proteins [BR:
agat03400
]
RWV98_12455 (rpoC)
Enzymes [BR:
agat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RWV98_12455 (rpoC)
Transcription machinery [BR:
agat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RWV98_12455 (rpoC)
DNA repair and recombination proteins [BR:
agat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RWV98_12455 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD26
Motif
Other DBs
NCBI-ProteinID:
WNX83421
LinkDB
All DBs
Position
complement(2570263..2573802)
Genome browser
AA seq
1179 aa
AA seq
DB search
MGYHTFNAIKIGLASPDLIREWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWECH
CGKYKKVRFKGKVCDKCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDIS
PRVLEKVLYFASYIVIDPGDTPLMKKQILTEAEYRDMREKYEDDFKAGMGAESIKALLAE
LDLDKLSAELTAELHEASGQKRLRLIKRLEVAESFRLSGNRPEWMIMDVVPVIPPEIRPM
VQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNGRR
GRPVTGPNNRALKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKIYQCGLPKEM
ALELFKPFVMKKLVEDGTASNIKSAKKMVERAKTEVWDVLEGIIKGHPVMLNRAPTLHRL
GIQAFEPVLVEGRAIRLHPLVCTAFNADFDGDQMAVHVPLSAEAQAEARLLMLSANNLLK
PQDGKPVTIPSQDMVLGAYYLTIDRETEPGTGKIFRNADEALMAYDQGVVGIHAPIKVRM
ERDLGDRKISKLVDATPGRLIFNERIPQDLGFVDRSDPDKLLDLEIMFTAGKKELGKIID
RCIHVHGFNVTAEVLDSIKAMGYKYSTKGALTVAVADMSVPDEKPVLIGETEKKVALIDK
KYKRGFITDDERYRLTVAEWEKTTGEVTKALQGNMEKFNPIQMMATSGARGSINQIRQLA
GMRGLMASTSGKTIEIPIKSNFREGLSVLEYFISARGARKGLADTALRTADSGYLTRRLV
DVSQDVIIREDDCGAVKGIWVEDIKEGNQIIEPLRERLLGRYPVNDIMDDAGNLIVSSSK
MLDEADADRIIAAGIKRVQLRSVLECRARKGVCTHCYGMNLATGNPCGKGEAVGIIAAQS
IGEPGTQLTMRTFHTGGVAGSDITQGLPRVEELFEARKPKKAATLAEIGGVVSIEESKRT
TVKTVNITNRDSGEMVSYQLASSSGIRVEDGQTVAVGEQLNDGALNPHDILRILDPRAVH
DYEIKEVQKVYRQQGVDINDKHIEVIVRQMMRKVRVEDAGDATVLPGSVMDLLEFEDCNK
QVQSRIEAGEEGLQPAVSEPTLMGITKASLATDSWMSAASFQETTRVLTDAAIKGKVDPL
LGLKENVIIGKLIPAGSGMTEYCDGHYEKTVDLDSNSSL
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgggatatcatacattcaacgccataaaaatcggccttgcctcgcccgacctgatccgt
gaatggtcgtacggtgaggtgaaaaagcccgaaaccatcaactaccgcacgctcaagcct
gaaaaggacggccttttctgcgagcgtatctttggcccaaccaaggactgggagtgccac
tgcggcaaatataagaaggttcgctttaagggcaaggtctgcgataagtgcggcgtagag
gtcacccgcgccaaggtccgccgcgagcgcatgggccacatcgagctggccgcgcccgta
tcgcacatctggtatttcaagggcattccgtcccgcatgggcctgattctcgacatcagc
ccgcgcgtactggaaaaggtgctctactttgcctcttatatcgtcattgatcccggcgac
acgccgctgatgaagaagcaaatcctgaccgaagccgagtaccgcgacatgcgcgaaaag
tacgaggatgacttcaaggccggcatgggcgccgaatcgatcaaggctctgctagccgag
ctcgatctggataagctttcggcggaactgaccgccgagctgcacgaggcttccggccag
aagcgcctgcggcttatcaagcgccttgaggtcgcggaatcgttccgcctttcgggcaac
cgcccggagtggatgatcatggacgtcgtgccggtcatcccgcccgagatccgtccgatg
gtacagctcgacggcggccgcttcgcaacgagcgacctcaacgacctgtaccgccgcgtg
atcaaccgcaacaaccgcttaaagcgcctgcttgagctgggcgctcccgatatcatcgtg
cgcaacgaaaagcgcatgctgcaagaggctgtggacgcgctgatcgataacggccgccgc
ggccgcccggtcaccggtccgaacaaccgcgccctcaagagcctgtccgacatgctcaag
ggcaagcagggccgcttccgccagaacctgctgggcaagcgcgtcgactactccggccgt
tcggtcatcgtcgtcggtccggacctgaagatatatcagtgcggcctgcccaaggagatg
gcgctcgaactgttcaagcccttcgtcatgaagaagctggtcgaggacggcaccgcctcc
aacatcaagtccgccaagaagatggtggagcgcgccaagaccgaggtctgggacgtgctg
gaaggcatcatcaagggccacccggtcatgctgaaccgcgcgcccacgctgcaccgtctg
ggcattcaggcgttcgagcccgtcctcgtcgagggccgcgccatccgcctgcacccgctg
gtatgtactgcgttcaacgccgactttgacggcgaccagatggcggtgcacgtgccgctt
tccgccgaggcgcaggccgaggcccgcctgctcatgctgtccgcgaacaacctgttgaag
ccgcaggacggcaagcccgtcaccatcccctcgcaggacatggtgcttggcgcttactac
ctgaccatcgaccgcgaaaccgagccgggcaccggcaagatcttccgcaacgcggacgag
gcgctgatggcctacgatcagggcgttgtcggcatccacgcgccgatcaaggtgcgcatg
gagcgcgatctgggcgaccgtaagatatccaagctggtcgacgcaaccccgggccgtttg
atcttcaacgagcgcattccgcaggatttgggctttgtcgaccgttccgatcctgacaag
ctgctggaccttgaaatcatgttcaccgcgggcaagaaggagcttggcaagatcatcgac
cgctgcattcacgtgcacggcttcaacgtcacggccgaggtgctggactcgatcaaggcc
atgggctataagtattccaccaagggcgcgctgaccgttgcggttgccgatatgtcggtt
ccggatgaaaagccggtgctgatcggcgagaccgaaaagaaggtcgccctgatcgataag
aaatacaagcgcggctttatcacggacgacgaacgctaccgcctgaccgttgccgagtgg
gaaaagaccacgggcgaagtcaccaaggcgctgcagggcaacatggagaagttcaacccg
atccagatgatggctacctcgggcgctcgtggttcgatcaaccagatccgtcagctggcc
ggtatgcgcggcctgatggcatccacctccggtaagacgatcgaaatcccgatcaagtcc
aacttccgtgaaggcctgtcggtactcgagtacttcatctccgcgcgtggcgcccgtaag
ggtctggccgataccgcgcttcgtaccgccgactcgggttacctgacccgccgtctggtc
gacgtttcgcaggatgtcatcatccgcgaggacgactgcggcgctgtcaagggcatctgg
gtagaagacatcaaggaaggcaaccagatcatcgagccgctgcgcgagcgcttgctcggc
cgctacccggtgaacgatatcatggacgacgcgggcaatctgatcgtgtccagcagcaaa
atgctggatgaggcggacgcagaccgcatcatcgccgccggcatcaagcgcgtgcagctg
cgcagcgttctggaatgccgcgcgcgcaagggcgtgtgcacccattgctacggcatgaac
cttgccaccggcaatccgtgcggcaagggcgaagcggtaggcattatcgcggcccagtcg
atcggcgagcccggcacccagctgaccatgcgtaccttccacaccggcggcgtcgccggt
tcggatatcacgcaaggtctgccccgtgtagaagaactgttcgaggcgcgcaagcccaag
aaggccgcgaccctcgcggagatcggcggcgtggtttcgatcgaggaatccaagcgcacc
acggtcaaaaccgtcaacatcaccaaccgcgactccggcgaaatggtttcgtaccagctg
gcttcttcctccggcatccgcgtggaggacggccagactgtcgccgtgggcgagcagctc
aacgacggcgcgctgaacccgcacgatattctgcgcatcctcgatccgcgcgccgtgcac
gattatgagatcaaggaagtacagaaggtttaccgccagcagggcgttgatatcaatgat
aagcatatcgaagttatcgtccgccagatgatgcgcaaggtgcgcgttgaggacgcgggc
gacgcgaccgtgctgcccggctcggtcatggacctgcttgagtttgaggactgcaacaag
caggtgcagagccgtatcgaagcgggcgaggaaggcctgcagcctgcggtctccgagccg
acgctgatgggtatcaccaaggcttctctggctacggattcgtggatgagcgccgcgtcc
ttccaggagaccacgcgcgtgctgaccgacgccgccatcaagggcaaggtcgacccgctg
ctgggcctgaaggaaaacgttattatcggcaagctgatccccgccggttcgggcatgacc
gagtactgcgacggtcattacgaaaaaacggtggatctcgattccaacagttccttataa
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integrated database retrieval system
