Agathobaculum sp. NTUH-O15-33: RWV98_13900
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Entry
RWV98_13900 CDS
T09495
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
agat
Agathobaculum sp. NTUH-O15-33
Brite
KEGG Orthology (KO) [BR:
agat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agat03400
]
RWV98_13900
Enzymes [BR:
agat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RWV98_13900
DNA repair and recombination proteins [BR:
agat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
RWV98_13900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
DAP3
AAA_29
Motif
Other DBs
NCBI-ProteinID:
WNX83677
LinkDB
All DBs
Position
complement(2868456..2871839)
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AA seq
1127 aa
AA seq
DB search
MRILTGRAGSGKSTFLLREIAGCCERGEGRQILLVPELNSHVYERRLAKFTNNHGARTAE
VLTFSRLTDRVLAAVGGLAQQALTDAGRLLTLQRAALTVQTSIQAWPGLADKPELLREAL
SLIDECKTCAVPPQSLFEASGEAEDAALAAKLSDLAVLLTAYDRLCDESLPDPRDRLTLL
RDGLAASGVLDGAAAYLDGFLSFTPQETQVLDTMLACGVPLTVAVTGDLRYPDVFVTGCR
TVKALSRMAARHGKEAEKIDLGESKIPRPADLAALEAEGLLPLRTPRPAEGQGVCIYAAE
TVFEECEHAAALIRRRVREEGLRYRDFVVAARDMAGYEAPLAMAMERYGVPCFLAEKPDL
LSRPPIALVALALEAVRTHYHYEELFGCFKTGLTALSWDEIDKLENYALTWGLRGGAWER
PWEAHPDGYGLPMDEAASARLAELNALREKAIAPFAALRASLAGENTAVDCVRALYAFLC
AVRAPERLAQRAEAHEEAGRPQLADEYRQLWDILVSAMEQFAWVCGEIPLTAERFSALFR
LVLGEYEVGTIPVSLDRVTCGDIDRACGENAKHVILLGVNDGLIPRTGAGAGLLTDFDRE
KLDALGVELKSYGAERLLMEQETLYRALACPTESLTLCWHAADAAGKEARPSYFIGAVRS
LLPGVPMKDFHGSADRLEAEGPAIELACAYLAGDHTPAARAAFEAYRGEERVLAAKSQRL
ARGPLESRHTIDGLYGKQLNLTASRVDTFYSCRFAFFMQYGLKAKKRRVAKFDAMQTGTF
LHYVLEHALTALGENPGGAAAATAEQAKRACREAVRAYVRDELGGLEGQTARFRYLFRRL
TKTAEEILDNVLEELRVSDFAPIDYEVDFSRSGDLPPISCEDAGVEVALSGKVDRVDGYV
KDGRLYLRVMDYKSGKKSFSLSDVWYGLNMQMIIYLYALQQEGLDRYRERLAAELNEIVP
AGILYVPVRDELPEAARVVDEETLRDMRDKALRRSGLVSDDMELLDAMERGLSGDGRFLP
VSVKVKKGEDEPTLTARSAVADLAKFGRLARYTRQKLLEMGRELRAGSIGADPRKKDKVS
SYCDWCDYRAACRFDESAGDRARLLRHLTNEEFWDEIGGTPDAAVDK
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcctgaccggccgggcgggcagcgggaaaagcacctttctgctccgcgagatc
gccggatgctgcgagcggggcgaggggcggcagattcttctggtgcctgagctaaattcc
cacgtatacgaacggaggctcgcgaaattcacgaataaccatggcgcgcgcaccgccgaa
gtgcttaccttttcgcggctgaccgaccgggtgctggccgccgtgggcggcttggcgcag
caggcgctgacggacgcggggcggctgctcaccctgcagcgcgccgcgcttaccgtacaa
accagcatccaagcgtggcccggccttgcggataagcctgagctgctgcgcgaggcgctg
tcgctgatcgatgagtgcaagacctgcgccgtgccgccgcagtcgctttttgaagcttcg
ggcgaggcggaggacgctgcgcttgcggccaagctatccgatctggcggtgctgctcacc
gcctacgaccggctgtgcgacgagtcgctgcccgatccgcgcgaccggctgaccctgctg
cgggacggccttgcggcgtcgggcgtgctggacggcgctgccgcctatctggatggcttt
ttgagcttcaccccgcaggaaacacaggtgctggacacgatgcttgcctgcggcgtgccg
ctcaccgtggcggtgacgggcgatttgcgctaccccgatgtgttcgtgaccggctgccgc
acggtaaaggccctttcgcgcatggccgcgcggcatggcaaggaagccgaaaaaatagac
ttgggtgaaagcaaaataccccgcccggccgatttggcggcgctggaagcggaaggtctg
ctgccgctgcgcacaccgcgtccggcagaggggcagggcgtttgcatctatgccgccgag
accgtgtttgaggaatgcgagcacgcggccgcgctcatccgccgccgcgtgcgggaggag
ggacttcggtaccgtgattttgtggtggccgcgcgcgatatggcggggtacgaggctccg
ctcgccatggcgatggagcggtacggcgtgccctgctttttggccgaaaagcccgatctg
ctttcccgcccgccgatcgcgctggttgccctcgcgcttgaggcggtgcgcacgcattac
cactatgaggagctgttcggctgctttaagaccggcctgaccgcgctttcttgggacgag
atcgacaagctggaaaactatgcgctcacttggggcctgcgcggcggcgcgtgggagcgc
ccgtgggaagcgcatccggacggctacggcctgcccatggacgaggccgcctccgcgcgt
ttggccgaactgaacgcgctgcgggaaaaagcgatcgcgccgtttgcggcgctgcgcgcg
tcccttgcgggcgaaaacacggcggtggattgcgtgcgcgcgctctacgcctttttgtgc
gcggtgcgcgcgcccgagcgccttgcgcagcgcgccgaagcgcacgaggaggccgggcgg
ccgcagctggccgatgaataccgccagctatgggacatcctggtttccgcgatggagcaa
tttgcttgggtatgcggagagataccgcttacggccgagcggttctccgccctgtttcgg
ctggtgctgggcgagtacgaagtgggcaccatcccggtatcgctcgaccgggtgacctgc
ggcgatatcgaccgcgcctgcggcgaaaacgccaagcatgtgatcctgcttggcgtgaac
gacgggctgattccgcgcaccggcgcgggcgcgggactgctgacggattttgaccgggaa
aagctggacgccctcggcgtggaactgaaaagctacggggcggaacggctgctgatggag
caggaaacgctttaccgcgcgctggcctgcccaacggagagcctaaccctttgttggcac
gcggcggacgcggcgggcaaggaggcgcggccctcgtacttcatcggcgcggtgcgcagc
ctgctgccgggcgtgccgatgaaggattttcacggcagcgccgaccggctggaggccgag
ggcccggcgatcgagctggcctgcgcctatctcgcgggcgaccatacgcccgccgcgcgc
gcggcctttgaagcctaccggggagaggaacgggtgctcgccgcgaaaagccagcggctt
gcgcgcggcccgctcgaaagccggcacacgatcgacgggctgtacggcaagcagctgaac
ctgaccgcgtcgcgcgtggatacgttctattcctgccggttcgcgtttttcatgcagtac
ggtctgaaggcgaaaaagcgccgcgtggcgaaattcgacgcgatgcagaccggcactttt
ctccattatgtgctggaacacgcgctcaccgcgctgggcgaaaatccgggcggcgcggcg
gcggccacggccgagcaggcaaagcgcgcctgccgcgaggcggtgcgcgcttatgtgcgg
gacgagctgggcggactggaagggcagaccgcgcgctttcgctatctcttccgcaggctg
accaaaaccgcagaggaaattttggataatgtgctggaggaattgcgcgtttccgacttc
gcgcccatcgattacgaggtggacttttcgcgctccggcgatctgccgcccatctcgtgc
gaggacgcgggcgtggaggtcgcgctttccggcaaggtcgaccgggtggacggctatgta
aaggacggccgcctgtatctgcgcgtgatggactataaaagcggcaaaaagtcgttttcg
ctgtccgacgtgtggtacggcctgaacatgcagatgatcatctatctgtacgccttgcag
caggaggggctggaccgctaccgcgaacggctggcggccgagctaaacgagatcgtgccc
gcgggcattctgtacgtacctgtcagggacgagctgcccgaagccgcccgggttgtggat
gaagaaacgctgcgcgacatgcgcgacaaggcgctgcgccgttccggtctggtatccgac
gatatggagctgctggacgcgatggagcgcggcctttcgggcgacggacgttttttgccc
gtttccgttaaggtgaaaaagggcgaggacgagccgacgctcaccgcccgttcggctgtg
gccgatctggcgaagttcggcagactggcgcgctacacgcggcaaaagctgctggaaatg
gggcgcgagctgcgcgcgggcagcataggtgccgatccgcgcaaaaaggacaaggtatcg
agctattgcgattggtgcgattaccgcgcggcctgccggttcgatgagagcgcgggcgac
cgcgcgcgcctgctgcgccatttgacgaacgaggaattttgggacgagattgggggaacg
ccggatgccgcagtggacaagtga
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