KEGG   Agathobaculum sp. NTUH-O15-33: RWV98_17780
Entry
RWV98_17780       CDS       T09495                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
agat  Agathobaculum sp. NTUH-O15-33
Pathway
agat02024  Quorum sensing
agat03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:agat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RWV98_17780 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    RWV98_17780 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:agat03019]
    RWV98_17780 (hfq)
   03036 Chromosome and associated proteins [BR:agat03036]
    RWV98_17780 (hfq)
Messenger RNA biogenesis [BR:agat03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     RWV98_17780 (hfq)
Chromosome and associated proteins [BR:agat03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    RWV98_17780 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: WNX84401
LinkDB
Position
3653749..3653979
AA seq 76 aa
MDNRTPINLQTVLLNTVRKDRMPVTIYLTNGFQIRGVITGYDNNVIIVKSNETQEMIYKH
AISTIVPQSPVEIITQ
NT seq 231 nt   +upstreamnt  +downstreamnt
gtggacaatcgaacgccaatcaatttgcagaccgtactgttaaatactgtgcgcaaagac
cgcatgccggtgaccatctatctgacaaacggctttcagatcaggggtgtcataaccgga
tacgacaataatgtcatcatagtaaagtccaacgagacgcaggagatgatctacaaacat
gcaatatcgactatagtaccgcaatcacccgttgaaatcatcactcaataa

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