Agathobaculum sp. NTUH-O15-33: RWV98_18335
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Entry
RWV98_18335 CDS
T09495
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
agat
Agathobaculum sp. NTUH-O15-33
Pathway
agat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RWV98_18335 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agat03019
]
RWV98_18335 (recQ)
03400 DNA repair and recombination proteins [BR:
agat03400
]
RWV98_18335 (recQ)
Enzymes [BR:
agat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RWV98_18335 (recQ)
Messenger RNA biogenesis [BR:
agat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RWV98_18335 (recQ)
DNA repair and recombination proteins [BR:
agat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RWV98_18335 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Glyco_hydro_57
Helicase_Sgs1
HHH
Motif
Other DBs
NCBI-ProteinID:
WNX84508
LinkDB
All DBs
Position
3779645..3781501
Genome browser
AA seq
618 aa
AA seq
DB search
MESAAAKQVLKQYFGYDSFRPGQDRLIEAILEGRDVLGVMPTGAGKSLCYQVPALLLPGV
TLVISPLISLMQDQVGALRQSGVPAAYLNSALSAAEMGDTLYEARQGGYKLLYVAPERLT
APDFLAFAREAEISMVTVDEAHCISQWGQDFRPSYLKILDFLSLLPRRPLVSAFTATATA
TVREDVVRALALREPFTLTTGFDRPNLYFAVEHPSSKPQALLRLLAGRRDKSGVIYCATR
KTVEDVCDMLCAKGLAATRYHAGLPAEERQQNQDDFLYDLKPVMVATNAFGMGIDKSNVS
FVIHYNMPKNMESYYQEAGRAGRDGEPADCILLYSGQDVHTARFLIERSREAAPEEGLDE
QTRAALLDREYERLRQMTFYATTTDCLRRFILGYFGEAAPVSCGHCGNCDTTFEEVDATL
DAQKILSCVYRLAERGLHFGKIVVSAVLCGSQSEKIEKFGLQSLSTYGIMEEQTAKRVRQ
LIDTLIDRGCLQSDAERHNTLYLTPAGNALMRGRDTFVIKLPREKPPALKAAEKAGAAVG
TADSTLFDLLRDCRARLARQAHVPPYIIFSNAALSDMAARKPITAEEFLEVRGVGEAKAD
RYGVPFLETIKAYLREKD
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggaaagcgcggcggcaaagcaggttttaaagcaatatttcggctatgattcgtttcgg
cccgggcaggatcggctgatcgaggccattctggaggggcgcgacgtgctcggcgtgatg
cccacgggcgcgggcaaatcgctttgctatcaggtgcccgcgctgctgctgcccggggtg
acgctcgtcatctcgccgctgatctcgctgatgcaggatcaagtcggcgcgttgcggcag
tccggcgtgccagccgcttatttaaacagcgcgctttccgccgccgaaatgggcgatacg
ctgtacgaagcgcggcagggcggctacaagctgctttatgtcgcgcccgagcgcctgact
gcgccggattttcttgcctttgcccgcgaagccgagatctccatggtcacggtggacgaa
gcacactgtatttcccagtgggggcaggattttcgccccagctacttaaaaatactcgat
tttctttcgcttttgccgcgccgtccgctcgtttccgccttcaccgcgaccgcgacagcc
acggtgcgcgaggatgtcgtgcgcgcgctcgccctgcgcgagccgttcacgctgacgacc
ggcttcgaccggcccaatctctatttcgcggtcgagcacccatccagcaagccgcaggcg
ctgctgcgcctgctcgccgggcggcgggacaaaagcggcgtgatctactgcgcgacgcga
aaaaccgtggaggatgtgtgcgacatgctctgcgccaagggccttgccgcgacccgctac
cacgcgggcctgcccgcggaggaacggcagcaaaatcaggatgattttttgtatgatctg
aagccggtcatggtggcgaccaacgctttcggcatgggcattgacaaatcgaacgtttcc
ttcgtgattcactacaatatgccgaaaaacatggaaagctactatcaggaagccggacgc
gcggggcgcgacggcgaaccggcggactgtatccttttatacagcgggcaggatgtgcac
accgcccgcttcctgatcgagcgcagccgcgaggccgcgcccgaggagggactggacgag
caaacgcgagccgccctgctggatcgggaatatgaacgcctgcgccaaatgaccttttac
gccaccacgaccgattgcctgcgccggttcatcctaggctatttcggcgaagccgcgccg
gtatcgtgcgggcactgcggcaactgcgacaccacctttgaagaggtggacgccaccttg
gacgcgcagaaaattttatcctgcgtgtaccggctggccgaacgcgggctgcatttcggc
aagatcgtcgtcagcgccgtgctgtgtggcagccaaagcgaaaaaatagaaaagttcggc
ctgcaatcgctttccacctatggcattatggaagagcagacggcaaagcgcgtgcggcag
ctgatcgataccttgatcgaccggggctgcctgcaaagcgacgccgaacgccacaacacg
ctgtacctgacgcctgcgggcaacgcgctcatgcgcgggcgcgacacctttgtaatcaag
ctgccgcgcgaaaagccgcccgcgctcaaggccgcggaaaaggccggggccgccgtgggc
acggccgattccacgctgttcgacctgctgcgcgactgccgcgcccgtctggcgcggcaa
gcgcatgtgccgccctatattatcttttccaacgccgccttaagcgacatggccgcccgc
aagcccattaccgccgaggaattccttgaagtgcgcggcgtgggcgaagccaaggccgat
cgctacggcgtaccctttctggaaaccatcaaagcctatttgcgcgaaaaagattga
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