Agathobaculum sp. NTUH-O15-33: RWV98_18530
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Entry
RWV98_18530 CDS
T09495
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
agat
Agathobaculum sp. NTUH-O15-33
Pathway
agat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RWV98_18530 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agat03019
]
RWV98_18530 (rnr)
03016 Transfer RNA biogenesis [BR:
agat03016
]
RWV98_18530 (rnr)
Enzymes [BR:
agat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RWV98_18530 (rnr)
Messenger RNA biogenesis [BR:
agat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RWV98_18530 (rnr)
Transfer RNA biogenesis [BR:
agat03016
]
Prokaryotic type
tRNA degradation factors
RWV98_18530 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_Dis3
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
WNX84546
LinkDB
All DBs
Position
3827342..3829588
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AA seq
748 aa
AA seq
DB search
MEPNELDSALYALLSKPMQIEDIRRALPNAEKQALRDSLDRLIAAGRVMKNKKNRFAQVG
HYGCVAGTFLATERGFAFVRPDAEGDAPERADDLFIPPNAGGGAWHGDHVLVKVYERGGS
RGRTEAAVLRVLQRAGGELTGALIRRGKDYFVQPSSKKFPEIAIGRQNLGEASVGDRVAV
EVSYYGSDTVMPQGKIRADLGEDGTMEASIAGILRENGVQDVFPADASAAAERVPQSVDP
AEAAQRLDLRDKLIFTIDGDDAKDFDDAVSLETLENGHLLLGVHIADVSHYVTPDSPLDA
EAFRRGTSVYYPGHVVPMLPFALSHGICSLNPDEDRLAFSAMMEFDKDGRRHKASFAKSV
IRSGARMTYRNVNKILAGDEDLRGKYAFLTEAIEGMNALAQTLNRRRIERGALELDIPET
EIVVDSEGKPVDLQYRERGQSERLIEEFMLQANEAVAEYMVRRERPTVYRVHENPDPEKL
RVFATFARPFGYRVDPSKPQDTAQLQAVLNGAKGDPKQRILPMLLLRSLARARYSEECIG
HYGLKAKYYLHFTSPIRRYPDLIAHRMLQKSLLGEEITPADETMCEDAAQQSTAREFAAD
TCERDIDKLYTAAYMKQFIGETFEGEVSGVAPFGLFIALENGCEGLVRVELLEGDYYEYD
EQHMSMQGRHTGKRFTIGTPLTVTLLAASEVTGQIDFGPAEGVLPASDKARQPAERPPYR
TGPTGKGAGKGSSGAHHRKRRPAKRGRR
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggaaccaaatgaactggacagtgcgctttacgcgctgctatcaaagcccatgcagatc
gaagacatccgacgcgcgctgcccaacgcggaaaagcaggcgctgagggacagccttgac
cggctgatcgcggcgggccgcgtgatgaaaaacaaaaagaaccgctttgcgcaggtcggg
cactacggctgcgtcgcgggcacctttctcgcgaccgagcgcggttttgcctttgtgcgg
cccgacgcggaaggagacgcccccgaacgggcggacgacctgttcatcccgccgaacgcg
ggcggcggcgcgtggcatggcgaccatgtgctggtaaaggtatatgagcggggcggcagc
cggggccggaccgaggccgccgtgctgcgcgttttgcagcgtgcgggcggcgaactgacc
ggcgcgctcattcggcgcggcaaggactatttcgtacagccgagcagcaaaaagttcccc
gagatcgcgatcggccgccagaatcttggcgaagcttcggtgggcgaccgcgtcgcggtc
gaggtgtcgtattacggcagcgataccgtgatgccgcagggcaagattcgcgccgatctg
ggcgaggacggcacgatggaagccagcatcgcgggcatcctgcgcgagaacggcgtacag
gacgtattccccgcggatgcttcggcggcggccgagcgcgtgccgcaatccgtcgatccc
gcggaggcggcccaacgcctcgacctgcgcgacaagctgatcttcaccatcgacggggac
gacgccaaggactttgacgacgccgtatcgctggaaacgctggaaaacggccacctgctg
ctgggcgtgcacatcgcggacgtgagccactatgtcacccccgactcgccgctggacgcg
gaggccttccgccgcggcacctcggtttattacccgggccatgtggtgcccatgctgccc
ttcgccctgtcgcacggcatttgctcgctaaatccggacgaggaccggctggccttttcc
gcaatgatggaattcgacaaggacggccgccgccataaggcctcctttgccaagtccgtc
atccgctcgggcgcgcgcatgacctaccggaacgtcaacaaaatcctcgcgggtgatgag
gacctgcgcgggaaatatgcttttctgaccgaagcgatcgagggaatgaacgcgctcgcg
cagacgctgaaccgccgccgcatcgagcgcggcgcgcttgagctggacatcccggaaacc
gagatcgtcgtcgacagcgagggcaagccggtcgatctgcaataccgtgagcgcggtcaa
tccgaacggctgatcgaggaattcatgctgcaagcgaacgaagccgtggccgaatacatg
gtgcggcgcgagcggcccaccgtttaccgcgtgcacgaaaacccggaccctgaaaagctg
cgcgtattcgcaacctttgcgcggccgttcggctaccgggtcgatccctccaagccgcag
gacaccgcccagctgcaagccgtattgaacggcgccaagggcgatcccaagcagcgcatc
ctgcccatgctgctgctgcgcagtctggcacgcgcgcgctattccgaggaatgcatcggc
cactacggcctgaaagccaagtactatctgcactttacctcgcctatccgccgctatccc
gatctgatcgcccaccgtatgctgcaaaagagccttttgggcgaagaaataacgcccgcg
gatgaaacgatgtgcgaggacgcggctcagcaatcgacggcgcgcgaattcgcggccgat
acctgcgaacgcgacatcgacaagctgtacaccgccgcctatatgaagcagtttatcggc
gagacctttgagggcgaggtatccggcgtcgcgccgttcggcctgtttatcgcgctggaa
aacgggtgcgagggccttgtgcgcgtcgagctgctggagggcgactattatgaatacgac
gagcagcacatgagcatgcagggacggcataccggcaagcgctttacaatcggcacgccg
ctcaccgtgacgctgctcgccgcgagcgaggtcaccggccagatcgacttcggcccggcg
gagggcgtgctgcctgcttccgacaaggcgcgtcagcccgccgagcggccgccgtaccgc
accggccccacaggcaagggggccggtaagggatcgtccggcgcgcaccacagaaagcgc
cgtcccgcgaagcgggggcgtcggtga
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