Agathobaculum sp. NTUH-O15-33: RWV98_18935
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Entry
RWV98_18935 CDS
T09495
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
agat
Agathobaculum sp. NTUH-O15-33
Brite
KEGG Orthology (KO) [BR:
agat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agat03032
]
RWV98_18935 (gyrB)
03400 DNA repair and recombination proteins [BR:
agat03400
]
RWV98_18935 (gyrB)
Enzymes [BR:
agat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
RWV98_18935 (gyrB)
DNA replication proteins [BR:
agat03032
]
Prokaryotic type
DNA Topoisomerases
RWV98_18935 (gyrB)
DNA repair and recombination proteins [BR:
agat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RWV98_18935 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
EIIBC-GUT_N
Motif
Other DBs
NCBI-ProteinID:
WNX84622
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Position
3922153..3924087
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AA seq
644 aa
AA seq
DB search
MSEEIKDEMLDLTVTEAYDENQIQVLEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNSI
DEALAGYCTHIEVTIEKGDIIRVQDNGRGIPCGIHPQMGIPTLEVVLTVLHAGGKFDGSG
YKVSGGLHGVGSSVVNALSDWMEAEVRDGKEKHFMRFERGVTAKKMESVPCESETGTTIR
FHADPEIFETTDYDYDTLEKRLREQAFLNAGIRITLRDERDDDVVEDLMHYEGGIRQFVQ
HLNRTKTPLHEEVIYMEGSREGSMAEVAMQYTDSYSELMLSFANNINTTEGGTHETGFKS
ALTRVLNDYGRKYSVLKEGESFKGEDAREGLTAIISVKLQEAQFEGQTKTKLGNSDMRTL
VETMVGDKLMTFFEENPAVARTIIEKAQTAARAREAAKKAREMTRRKSALDSASLPGKLA
DCIEKDPAYTEIYIVEGDSAGGSAKEGRDRRYQAILPLWGKMLNVEKARLDRVYGNDKLT
PMITAFGAGFGDDFDPARLRYGKIILMADADVDGSHIRTLLLTFFFRFMRPLIEKGHVYI
AQPPLFKNEKGKDVRYIYDEDQQRACIEEMGDGVRVQRYKGLGEMDPQQLWETTMDPTNR
ILKQVTMDDAAAADETFALLMGEKVEPRREFIEKNAKYVMNLDV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagaaatcaaagacgagatgcttgatctaaccgtgaccgaagcatacgacgaa
aaccaaattcaggtgctcgaaggcctggaagccgtgcgtaagcgccccggtatgtacatc
ggttctacctcggcgagaggtttgcatcatctggtgtacgagatcgtagacaactcgatc
gatgaagcgctcgcgggctattgtacgcatatcgaagtaacgatcgaaaagggagatatc
atccgcgtgcaggataatggccgcggtattccctgcggcatccatccgcagatgggcatt
cccacgctggaggtcgttttgaccgtactgcatgcgggcggcaagttcgacggctctggc
tacaaggtatcgggcggcttgcacggcgtcggttcgtctgttgtgaacgcgctgtccgat
tggatggaagccgaagtgcgcgacggcaaggaaaagcactttatgcgctttgaacgcggc
gttaccgcgaaaaagatggaatccgtgccctgcgaaagcgaaaccggcaccaccatccgc
ttccatgccgatcctgaaatttttgaaaccaccgattatgattacgatacgctggaaaag
cggctgcgcgagcaggcgtttttaaacgcgggcatccgcatcacgctgcgcgacgagcgc
gacgacgacgtggtggaggacctgatgcattacgagggcggtatccgccaattcgttcag
catttgaaccgcaccaagaccccgctgcacgaagaagtcatctatatggagggcagccgc
gagggctcgatggccgaggtggccatgcaatatacggacagctacagcgaactgatgctt
tcctttgccaataacatcaacacgaccgagggcggcacccatgagaccggctttaaatcc
gccttgacccgtgtgctgaacgattatggccgtaaatacagcgttctgaaggaaggcgag
agctttaagggcgaggacgcccgcgaagggttgaccgccatcatctcggtcaagctgcaa
gaagcacagttcgagggccagaccaagaccaagctgggcaacagcgatatgcgcaccttg
gtggaaaccatggtgggcgataagctgatgaccttttttgaggaaaaccccgcggtagcg
cgcacgatcatcgaaaaagcgcaaaccgccgcccgcgcccgtgaagccgccaaaaaggcc
cgcgaaatgacgcgccggaaatccgcgttggattccgcttctctgcccggcaagctggcc
gactgtattgaaaaggaccccgcctatacggaaatctacatcgtggagggcgattccgcg
ggcggctcggccaaggaagggcgcgaccggcgctatcaggccattctgccgctctggggc
aagatgctgaacgtggaaaaagcccgtttggaccgcgtatacggcaacgataagctaacg
ccgatgatcaccgcctttggcgcgggctttggcgacgatttcgaccccgcgagactgcgc
tacggcaagatcatcctcatggccgatgccgacgtggacggcagccatatccgcacgctt
cttttgaccttcttcttccgctttatgcgtccgctgatcgaaaagggacacgtatatatc
gcccagccgccgcttttcaagaatgaaaagggcaaggatgtgcgctatatctacgatgag
gaccagcagcgcgcctgtatcgaagagatgggcgacggcgtgcgcgtacagcgctacaaa
ggtttgggcgagatggacccccagcagctttgggaaaccacgatggaccccacaaaccgc
attttgaagcaggtgaccatggacgacgcggccgccgcggacgaaacctttgccctgctg
atgggcgaaaaggtagaaccgcgccgcgaattcattgagaaaaacgccaagtatgttatg
aatttggatgtttga
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