Agathobaculum sp. NTUH-O15-33: RWV98_19060
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Entry
RWV98_19060 CDS
T09495
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
agat
Agathobaculum sp. NTUH-O15-33
Pathway
agat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RWV98_19060 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agat03400
]
RWV98_19060 (mfd)
Enzymes [BR:
agat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RWV98_19060 (mfd)
DNA repair and recombination proteins [BR:
agat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RWV98_19060 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
WNX84646
LinkDB
All DBs
Position
complement(3949759..3953241)
Genome browser
AA seq
1160 aa
AA seq
DB search
MIEITKSISALAEYREVRAAIKAGQTPVLAVGLSPIHKAHIAAALQLDLNRPVAVLTADE
SGATRMAADIAGFAERDVLTVSYRDLVMVNVAGVSRGYEQKRIAALCRLADAPLSVLSAP
AALQRTLPPDILRRATLTLEAGQTAPLEGLTARLTEAGYERCIQVEGTGQFSVRGGILDV
FPANAEHPFRVEFWDDEIDSISTFDVGSQRRLDNVSSLTCLPRMETLVHLAPGGANGLAD
AIEQLLKTRRKKHPDLAAHIARDAERLRETGSLPSADKYLPLIYPEMTTALDYLPENAVL
LIEDTPRLHEAARDFDARVGDDITALLERGEMPPDPGDFTLDFAGLCRLRRPIVRLDSFL
NTVPELAPAVLQNFTASQMNAYGGNLDLAAADIAGFIQQGKAVAVVCGSELRCKNMLDAL
SGAGVKAALSDLLPKPKQVAILEGTLSAGFEYPETGLVVMTEGQVLARRKKVAPRRGGRD
RVKSYTDLTPGDLVVHEHHGIGRFVGMERMEVDGADRDFIKIAFAGTDFLYVPATSLDLI
SKYIGGGDSERTRLNKLGGADWSRAKARAKAAAKELAEGLIQLYAARAKLKGFSFPPDDE
WQREFEDAFPYEETEDQLRCIAEIKSDMESDRPMDRLLCGDVGFGKTEVALRAVMKCILA
GKQAAILVPTTVLARQHFLTALQRFQGHPITIELLTRYKTTSEQKKILQKLEAGSIDLVI
GTHKLFRKDLKFKDLGLLVVDEEQRFGVSHKETLKEMSKQVDVLTLSATPIPRTLNMALS
GIRDMSAIEEPPLNRHPVQTFVLEQNEGVLLDAMRRELSRGGQVYYLHNHVESIARCALR
LKQHLPDAEVGIVHGKMTQKEIASAMNAMADGETDILVCTTIIETGIDIPNANTLIIENA
DAMGLAQLHQIRGRVGRSSRHAYAYLTYRRGKALSEIAQKRLSAIREYAAFGSGFKIAMR
DLEIRGAGNVLGPEQSGHMMSVGYDLYLKLLEEAVTEEKGETPRARVDCAAELLLSANLP
ADYVPDAGQRVDLYRRIALIRTEEQKSDMLDEMIDRFGEPPEQAVALLDIALLRAKASEQ
GISEIKQADGRLLMTFADADFRRLSALCGDKTYRGRLLLNAGSTPYVSLRLEKGEVPIEM
AGELVERYAETVEKAVSIHT
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaaataacaaaaagcatatcggcgcttgccgaataccgcgaggtccgcgcggcg
atcaaggccgggcaaacgccggtgctcgcggtgggtctttcgccgatccataaggcgcat
atcgcggcggcccttcagctcgacctgaaccgcccggtggccgtgctgaccgcggacgaa
tcgggcgcgacacgcatggccgcggatatcgcgggttttgccgaacgggacgtgcttacc
gtttcctaccgcgacctcgtgatggtaaacgtggcgggcgtttcgcgcggctatgagcaa
aaacggatcgcggcgctctgccgcctagccgatgcgccgctgtcggtgctctccgcgccg
gctgcgttgcagcgcacgctgccgcccgatatcctgcgccgcgcaacgctcacgctggag
gccgggcaaaccgcgcctttggaaggcctgaccgcccgcctgaccgaggcgggctacgag
cgctgcattcaggtggagggcacgggccaattctccgtgcgcggcggtattttggacgta
ttcccggcaaacgccgagcaccccttccgcgttgaattttgggacgacgagatcgattcg
atctccaccttcgatgtgggcagccagcggcggttggacaacgtttcctctcttacctgc
ctgccgcgcatggaaacgctggtgcatctggccccgggcggcgcgaacgggctggcggac
gcgatcgagcagctgctgaaaacgcgccgcaaaaagcaccccgatctggccgctcatatc
gcgcgggacgccgaacgcctgcgcgagaccggctcgctgcccagcgcggataaatatctg
ccgcttatttacccggaaatgacgaccgcgctcgattatctgcccgaaaacgcggttttg
ctgattgaggacacgccccgcctgcatgaagccgcgcgggattttgacgcgcgcgtgggc
gacgatatcacggcccttttggaacgcggcgaaatgccgcccgaccccggcgatttcacg
cttgatttcgcgggtctgtgccgtctgcgccgccccatcgtgcggctggacagcttttta
aacacggtgcccgagctggccccggccgttctgcaaaattttacggccagccaaatgaac
gcctacggcggcaacctcgatctggccgcggccgatatcgcgggctttatccagcagggc
aaagcggttgccgttgtgtgcggcagcgagcttcggtgcaaaaacatgctggacgcgctt
tccggcgcgggcgtcaaggcggcgctgagcgatctgttgcccaagcccaagcaagtcgct
attttagagggcacgctatccgccggctttgaatacccggaaaccggccttgtcgtcatg
accgaagggcaggtattggcccgccgcaaaaaggtggcgccccgtcgcgggggccgcgac
agggtaaaaagctataccgatttgacgccgggcgaccttgtcgtgcacgagcaccacggc
atcggccgctttgtcggcatggagcgcatggaggtggacggagccgaccgcgattttatc
aagatcgctttcgcgggcacggattttctctatgtgcccgcgaccagcctagacctgatc
tccaaatatatcggcggcggcgattccgagcgcacccggctgaacaagctgggcggcgcg
gattggtcgcgcgccaaggcgcgggccaaggccgccgccaaggaactggccgaggggctg
atccagctatacgccgcgcgcgccaagctaaaggggttctccttcccgccggacgacgag
tggcagcgcgaatttgaggacgccttcccctacgaggagaccgaggaccagctgcgctgc
atcgcggagattaaaagcgatatggaatccgaccggccgatggaccgcctgctctgcggc
gacgttggctttggcaagaccgaggtcgcgctgcgcgcggtgatgaagtgcatcctcgcg
ggcaagcaggccgctatcttggtgccgaccaccgtactggcccgccagcattttctgacc
gctttgcagcgctttcaggggcatccgatcaccatcgaactgctgacgcggtataaaacg
acctccgaacagaaaaagattctgcaaaagctggaagccggttcgatcgatctggtcatc
ggcacgcataagctgttccgcaaggatctgaaattcaaagaccttggcctgctggttgtg
gatgaggagcagcgcttcggcgtgagccataaggaaacgctcaaggaaatgtccaagcag
gtggacgtgctgacgctttcggccacgcccattccgcgcacgctcaatatggcgctttcc
ggcatccgcgatatgtcggccatcgaagagccgcctttaaaccgccaccccgtgcaaacc
tttgttttggaacagaacgaaggcgtgctgttggacgcgatgcgccgcgagctttcgcgc
ggcgggcaggtgtactatctgcacaaccatgttgaatccatcgcgcggtgcgcgctgcgc
ctaaagcagcacctgccggacgccgaggtcggtatcgtgcacggcaaaatgacgcaaaag
gaaattgcctcggccatgaacgccatggcggacggcgagaccgacatccttgtctgcacc
acgatcatcgagaccggcatcgacattcccaacgccaacacgctgatcattgaaaacgcg
gacgccatgggtctggcgcagctgcaccagatccgcggccgcgtcggccgttccagccgc
cacgcctatgcctacctgacttaccggcgcggcaaggccctcagcgagatcgcgcagaaa
cgcctttccgccattcgcgaatacgcggcctttggctcgggcttcaagatcgccatgcgc
gatctggagatacgcggcgcgggcaacgtactggggccggagcaatcgggccacatgatg
agcgtgggctacgatctgtacctcaagctgctggaagaagccgtgaccgaggaaaagggc
gagaccccgcgcgcccgcgtcgactgcgcggcggagctgctgctttcggcaaaccttccc
gcggactatgtgccggacgcgggccagcgtgtcgacctgtaccgccgcatcgcgcttatc
cgcaccgaggaacagaagagcgacatgctggacgaaatgatcgaccgctttggcgagccg
ccggagcaagcggtcgcgctgctcgatatcgcgctattgcgcgccaaggcttcggagcag
ggcatttccgagatcaagcaggcggacggacggctgctcatgacctttgcggacgcggat
ttccgccgcctgtccgccctgtgcggcgataagacctaccgcgggcggctgctgctcaac
gcggggtcgaccccctatgtctccctgcgtctggaaaagggcgaggtgccgatcgaaatg
gcgggcgagctggtcgaacgctatgccgaaacagtcgagaaagccgtttccatacacacc
tga
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