Agrobacterium sp. RAC06: BSY240_1066
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Entry
BSY240_1066 CDS
T04501
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
agc
Agrobacterium sp. RAC06
Pathway
agc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSY240_1066 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agc03019
]
BSY240_1066 (rnr)
03016 Transfer RNA biogenesis [BR:
agc03016
]
BSY240_1066 (rnr)
Enzymes [BR:
agc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BSY240_1066 (rnr)
Messenger RNA biogenesis [BR:
agc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSY240_1066 (rnr)
Transfer RNA biogenesis [BR:
agc03016
]
Prokaryotic type
tRNA degradation factors
BSY240_1066 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
AOG12065
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All DBs
Position
1090716..1093079
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AA seq
787 aa
AA seq
DB search
MSKRHRDPSETPGSGNRKSRRAEGAAKARSENPTALIHGEVPPREVLMQFITDNPDRASK
REIAKAFGLKGEQRVELKQALKDLEEDGLVQKSRKSLTRPGALPPVTVLDITTRDKDGEL
IGRPAEWPEEGGAAPAVLIRQSSSDRSKGKTPVGGLGDRVLAKIFANKDRSGPAYTARVI
KILDRHVGAVMGVVRMMPDGGARLMPIERRGEEMQIDASDIGEAKDGDLVEVEVARASRF
GLTRAKVLNVVGSVASEKAISMIAIHAHGIPHIFPQSVISEAEDAKPASMSHREDWRDLP
LITIDPHDAKDHDDAVYAELDTSPDNPDGVIVTVAIADVSYYIRPKSALDREALKRGNSV
YFPDRVVPMLPERISNDLCSLREGVDRPALAVRMVFSHEGRKASHTFHRIMMKSAAKLSY
QQAQAAIDGKTDDKTGPLLEPILKPLWHAYAVMKRGRDRRQPLELDMPERKIILKEDGTV
DRVHVPERLDAHKLIEEMMIQANVAAAETLEKKRQALIYRIHDAPTLAKQEVLREFLATL
GMSLVKGGNMRSNSFNGILAKAEDTPHQVIVNEMVLRSQSQAIYSPDNIGHFGLNLMKYA
HFTSPIRRYADLIVHRALVGSLGLGEGGITPDEEASLEDIAAEISTFERRAMAAERDTVN
RLIAHHLAGRIGDEFEGQIRGVTKSGLFVALPQFGADGFIPVSTLGRDYYIYDEAHQALT
GEKSGLGYQLGDIVEVKLVEAVPLAGALRFEMLSEGRKMPVATRSFHKAGRRNGHKQPGT
RPPRSRR
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaagagacaccgcgacccctccgagacacccggctccggcaaccgcaagagccgg
cgtgcggaaggtgcggccaaggcgaggagcgaaaaccccaccgccctcatccacggggaa
gtgcctccccgtgaagtgctcatgcagttcatcaccgacaaccccgaccgcgcctcgaaa
cgcgagatcgccaaggccttcgggctcaagggcgagcagcgggtcgaactcaagcaggcg
ctgaaggatctcgaagaagacggcctcgtgcagaagagccgcaagtccctgacacgaccc
ggcgccctgcccccggtcacggttctcgatatcacgacacgtgacaaggacggtgagctg
atcggcaggccggccgagtggcccgaagagggtggggcggcgccagctgttttgatccgc
cagtcgagttccgaccgttccaagggcaagacgcctgttgggggcctcggcgaccgggtg
cttgccaagatcttcgccaacaaggaccgatccggtccagcctataccgcccgtgtgatc
aagatcctcgatcgtcatgtcggtgccgtgatgggcgtggtgcggatgatgcctgacggt
ggggcacgcctgatgccgatcgagcgccgcggcgaggaaatgcagatcgacgccagcgac
atcggcgaggccaaggatggtgatctggtcgaggtggaagtcgcgcgtgccagccgtttc
ggcctgacgcgggccaaggtgctcaacgtcgtcggctcggttgcctcggaaaaggcgatc
tcgatgatcgcgatccacgcccatggcattccgcatatcttcccgcagtcggtaatatcg
gaggccgaggacgccaagcccgcgtccatgtcgcatcgcgaggactggcgcgacctgccg
ctcatcaccatcgacccgcatgacgccaaggaccatgacgacgccgtctatgccgaactc
gacacctcgcccgacaatcctgatggcgtgatcgtgacggtggccatcgccgatgtctcc
tattacatccggccgaaatcggcgctggatcgcgaagctctgaaacgcggcaattccgtc
tatttccctgatcgcgtcgtgccgatgcttcccgaacggatctccaacgatctctgctcg
ctgcgcgagggcgtcgaccggccggcgcttgccgtgcgcatggtcttctcgcatgagggc
cgcaaggcgagccataccttccaccgcatcatgatgaagagcgcggcgaaactctcatac
cagcaggcgcaggcggcaatcgacggcaagaccgacgacaagaccgggcccctcctggag
ccgatcctgaagcccctgtggcatgcctatgccgtgatgaagcgcggccgtgaccgtcgc
cagccgctcgagctcgacatgccggagcgcaagatcatcctcaaggaggacggcacggtc
gatcgcgtgcatgtgcccgagaggcttgatgcgcacaagctgatcgaagagatgatgatc
caggcgaacgtcgcggctgccgagacgctggagaagaagcggcaggcgctgatctaccgg
atccatgacgcgccgacgctcgccaagcaggaagttttgcgggagttcctcgccacgctc
ggcatgtcgctggtcaagggcggcaacatgcgctccaactcgttcaatggcattctggcg
aaagccgaagacacgccgcatcaggtcattgtcaacgagatggtgctgcgcagtcagagc
caggcgatctacagccccgacaatatcggccatttcggcctcaacctgatgaaatacgcc
cacttcacctcgccgatccgccgttatgccgacctcatcgttcacagggcgctggtgggt
tcgcttggtttgggcgaaggcggcatcacgccggacgaggaagcaagcctcgaggacatc
gcggctgagatctcgaccttcgagcgccgcgcgatggcggccgagcgcgacacggttaac
cgcttgatcgcgcatcatcttgccgggcgtatcggcgatgagttcgagggacagatccgg
ggcgtgaccaagtccggccttttcgtcgccctgccgcaatttggcgcagatggcttcatc
ccggtttccacgctgggccgggactactatatctacgacgaagcgcatcaggccctgacg
ggcgagaagtccgggctcggttatcagctcggcgacatcgtcgaggtcaagcttgttgaa
gcggtgccactggccggcgcgctgcgcttcgagatgctgagcgagggacgtaagatgccg
gtggcgacgcgttccttccacaaggcaggacggcggaacgggcacaaacagcccggcaca
cgtccgccgcgctcgcgacgttga
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