Agrobacterium sp. RAC06: BSY240_1083
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Entry
BSY240_1083 CDS
T04501
Name
(GenBank) RNA-metabolising metallo-beta-lactamase family protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
agc
Agrobacterium sp. RAC06
Pathway
agc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSY240_1083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agc03019
]
BSY240_1083
Messenger RNA biogenesis [BR:
agc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSY240_1083
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Ribosomal_uS5m_N
Regulator_TrmB
Motif
Other DBs
NCBI-ProteinID:
AOG08201
LinkDB
All DBs
Position
complement(1111000..1112667)
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AA seq
555 aa
AA seq
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MANNDELVFLPLGGVGEIGMNLALYGYGPPSNRQWIMVDCGVTFAGPDLPGVDLVLPDIS
FIKKQKKNLKGIIITHAHEDHYGALNDLWPGLNVPVYASRFTAGMLEAKRDYEGSRAEIP
ITPFKQGDRINVGPFEIEAIGVNHSIPEPMSLVIRTPLGNLIHTGDWKIDHNPSLGPLTD
EERFRAVGDEGVLAMFCDSTNAMRDGVSPSEEEVSAGLQKIIEAAEGRVAITTFSSNVGR
IRSIAQAAEAAGREVLLLGSSLKRVTAVADDIGIMQGIKPFIAEDEYGFIPRDKIVVILT
GSQGEPRAALAKLSRDEMRNVALTKGDTVVFSSRAIPGNEKAILEIKNGLIEQGVHIVTD
SDALVHVSGHPRRNELLKMYEWVRPQILVPVHGEAAHLVAQKELALQAGIPTVPRVRNGD
MLRIAPGPAEVIDQAPFGRVYKDGKLVGDIEEMGIADRKKLSYVGHVAVSVLLDSRFDFL
GDPDVVAFGLPEVDHEGELMEDTLYDAVLGAVESIPRSRRKDLDTVRESIRRAVRSTANE
VWGKKPIVTVFLTKV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggccaataacgacgaactggttttcctgccgctgggcggcgtgggtgaaatcggcatg
aacctcgcattgtacggctatggtccgccgtccaatcgccagtggatcatggtcgactgc
ggcgtgacattcgccgggccggatctgccgggtgtcgatctcgtgctgcccgatatcagt
ttcatcaagaagcagaagaagaacctcaagggcatcatcatcacccatgcccatgaagac
cattacggtgcactgaacgatctgtggccaggcctcaatgtgcctgtctatgcctcgcgc
ttcacggccggcatgctcgaagccaagcgcgactatgagggctcgcgcgccgagatcccg
atcacgcccttcaagcagggcgaccggatcaatgttggcccgttcgaaattgaagcgatc
ggcgtgaaccactcgatccctgagccgatgtcgctcgtcatccgcacgccgctcggcaat
ctcatccatacgggtgactggaaaatcgaccacaatccctcgctcggcccactgaccgac
gaagagcgcttccgtgccgtcggcgacgagggcgtgctggcgatgttctgcgattcgacc
aatgccatgcgtgatggtgtttcgccctccgaggaggaggtttcggcaggtttgcagaag
atcatcgaagctgcggaaggccgtgtggcaatcaccaccttttcctcgaatgtcggtcgt
atccgctcgatcgcccaggcggcggaagcggccggccgcgaagtcctgctgctcggcagt
tcgctgaagcgcgtaacggcggtcgccgatgacatcggcatcatgcagggcatcaagccc
ttcattgccgaagacgaatatggtttcatcccgcgcgacaagatcgtcgttatcctcacc
ggtagccagggcgagccgcgcgcagcactcgccaagctctcgcgtgacgagatgcgcaac
gtggcgctgacgaaaggcgacacggtcgtgttctcctcgcgcgccattccaggcaacgag
aaagccatcctcgaaatcaagaacggtctgatcgagcagggcgtccacatcgtcaccgac
agtgacgcacttgtccacgtttcgggccatccgcgccgcaacgaactgctcaagatgtac
gagtgggtccgtccgcagatcctcgtgcccgttcatggtgaggccgcccatctggtcgcc
cagaaggaactggcgcttcaggccggcatcccgaccgtaccgcgtgtccgcaatggcgac
atgctgcgcatcgcgccgggccctgccgaagtcatcgatcaggcacccttcggccgcgtc
tacaaggacggcaaactcgtcggcgacatcgaggaaatgggtatcgccgatcgcaagaag
ctctcctatgtcggccatgttgccgtcagtgtgcttctcgacagtcgcttcgatttcctt
ggtgatcccgatgtcgtggctttcggccttccggaagtcgaccatgagggagaactgatg
gaggatacgctttacgatgccgttctcggagcggtggaaagcattccgcgcagccgtcgc
aaggatctcgatactgttcgcgagtccatccgccgcgcggtgcgctcgactgccaacgaa
gtctggggcaagaagccgatcgtcacggtgttcctgaccaaagtctga
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