Agrobacterium sp. RAC06: BSY240_4196
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Entry
BSY240_4196 CDS
T04501
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
agc
Agrobacterium sp. RAC06
Pathway
agc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSY240_4196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agc03019
]
BSY240_4196
Enzymes [BR:
agc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSY240_4196
Messenger RNA biogenesis [BR:
agc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSY240_4196
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Helicase_RecD
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOG12458
UniProt:
A0AAI8D839
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All DBs
Position
complement(4379088..4380500)
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AA seq
470 aa
AA seq
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MTLTTFDDLGLSKNIVATLTTLGFTTPTPIQEKGIPVVLGGRDLIGLAQTGTGKTAAFGL
PMIEMLLKDEKRPDNRTTRALILAPTRELVNQIGDNLRSYLRRLPLKINQVVGGASIGKQ
QLQLEKGTDILVATPGRLLDLIARNAISLRAVRYLVLDEADQMLDLGFIHDLRKISKMVP
PKRQTLLFSATMPSAIADLASSFLTDPLKVAVSPPGKAADKVEQHVHFVAGQNAKTEMLK
KILNDNPDGRSIVFLRTKHGAEKLMKHLDATGYSVASIHGNKSQGQRERALKGFRDGEIK
TLIATDVAARGIDIPAVSHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCGPDEGRLL
RDIEKLMSIDIPVASGEPPANLARPARPQRRAGGGGGGNNRNHQAPGQGRGKSEGGAKAD
GRPAKSGHRKGGNGGGQNRSANGGQGRPGNGSGQGRPARSGTAGGRRREA
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgactttgacaactttcgatgatcttggcctctccaagaatatcgtcgcgacgctgacg
acgctcggcttcacgacccccactcccatccaggaaaagggcatccccgtcgttctcggc
ggccgcgacctgatcggcctcgcccagaccggcaccggcaagacggccgctttcggcctg
ccgatgatcgagatgcttctcaaggatgagaagcgccctgacaaccgcaccacccgtgcc
ctcattctcgccccgactcgcgaactggtaaaccagatcggcgacaacctgcgcagctac
ctgcgccgcctgccgctgaagatcaaccaggtcgtcggtggcgcctccatcggcaagcag
cagctgcagctcgaaaagggcaccgacatcctcgtcgccacgcccggccgcctgctcgac
ctgatcgcccgcaacgcgatctcgctgcgcgccgtgcgttacctggttctcgacgaagcc
gaccagatgctggacctcggctttatccatgacctgcgcaagatctcgaagatggtcccg
ccgaagcgtcagacgcttctgttctcggccaccatgccatcggcaatcgccgatctcgca
tctagcttcctgaccgacccgctcaaggttgccgtctcccctcccggcaaggctgccgac
aaggtcgaacagcacgtgcatttcgtcgcaggccagaacgccaagacggaaatgctcaag
aagatcctcaacgacaatccggatggccgctccatcgtcttcctgcgcaccaagcatggc
gcggaaaagttgatgaagcacctcgacgccaccggctactcggtcgcctcgatccacggc
aacaagagccagggccagcgagagcgcgccttgaagggtttccgtgacggcgagatcaag
acgctgatcgccaccgacgttgccgcccgcggcatcgacatcccggccgtctcccacgtc
ttcaactacgacctgccggaagtcccggatgcttacgttcaccgcatcggccgtacggcc
cgtgccggccgtgacggcatcgcgatcgcattctgcggtcccgatgaaggtcgcctgctg
cgcgacatcgaaaagctgatgagcatcgacatcccggtcgcctctggcgaaccgccggca
aacctcgcacgcccggcccgtccgcagcgtcgcgctggcggcggtggcggcggcaacaac
cgaaaccaccaggccccgggccagggtcgcggcaagtccgaaggcggcgccaaggccgac
ggtcgtcccgccaagtccggtcaccgcaagggtggcaatggcggcggtcagaaccgcagc
gccaatggcggccagggtcgtccgggcaatggcagcggccagggccgtccagcccgctcg
ggcactgccggcggacgccgtcgcgaagcctga
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