Agrobacterium sp. RAC06: BSY240_4435
Help
Entry
BSY240_4435 CDS
T04501
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
agc
Agrobacterium sp. RAC06
Pathway
agc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
agc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BSY240_4435 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agc03021
]
BSY240_4435 (rpoD)
Transcription machinery [BR:
agc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BSY240_4435 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5856
DUF4279
Relaxase_C
Phage_DsbA
DUF4168
Motif
Other DBs
NCBI-ProteinID:
AOG11617
LinkDB
All DBs
Position
4627784..4629847
Genome browser
AA seq
687 aa
AA seq
DB search
MASKVKENEEADSERDGAPDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS
EQIEDTMAMLSDMGINVIEDEDVDEAQSGEDDAEEEGESEGGELAPTAGTAVATAKKKEP
TDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQALIIWRDE
LNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKERAKRRPQAASGD
DDDITAIGGEGMPPEEEEEDEDESNLSLAAMESELRPQVMETLDLIADTYKKLRKLQDQQ
VEARLACAGTLSSGQERRYKELKDQLVTAVKSLSLNQNRIDSLVEQLYDISKRLMQNEGR
LLRLAESYGVKRDSFLEQYQGAELDPNWMKSIANLSARGWKDFAREENQTIRDIRGEIQN
LATETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ
EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRT
SRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDK
NALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRER
IRQIEAKALRKLKHPSRSRKLRSFLDS
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgaaagtcaaagaaaacgaagaagccgacagcgaacgcgacggcgcgccggac
ggtccgcttctcgatctttccgatgacgcggtcaaaaagatgatcaaggccgcgaaaaaa
cgcggctatgtgaccatggacgagttgaactcggttctgccgtcggaggaagtgacctcc
gagcagatcgaggacaccatggccatgctttccgacatgggcatcaacgtcatcgaagac
gaagacgtcgatgaagcccagagtggggaagacgacgccgaggaagaaggagagagcgaa
ggcggcgaactggccccgacggctggcactgctgtggcgaccgccaagaagaaagagccg
accgaccgtaccgacgatccggtgcgcatgtatctgcgcgagatgggctccgtcgagctt
ctgtcgcgcgaaggcgaaatcgcgatcgccaagcgcatcgaggctggccgcgagacgatg
atctccggcctctgtgagagcccgctgacctttcaggcgctgatcatctggcgcgacgaa
ctcaacgaaggcacgacgcttctgcgcgagatcatcgatctcgaaaccacctattccggt
ccggaagccaaggcggcaccgcagtttcagagcccggaaaagatcgaggccgaccgcaag
gcagccgaagagaaggaaaaggagcgcgccaagcgccgtccgcaggccgcttccggtgac
gacgacgacatcacggccatcggcggcgaaggcatgccgccggaagaagaggaagaggac
gaggacgaatcgaacctgtcgctggccgcgatggaatcggaactgcgtccgcaggtcatg
gagaccctcgacctcatcgccgacacctacaaaaagctgcgcaagctgcaggaccagcag
gtggaggcacgtctcgcctgtgccggcacgctgtcgtcaggccaggagcgccgctacaag
gagctgaaggatcagctggtcacggccgtcaagtcgctgtcgctcaaccagaaccgaatc
gacagcctcgtcgagcagctctacgacatctccaagcgcctgatgcagaacgagggacgc
ctgctgcgtctcgctgaaagctacggcgtcaagcgtgactcgttcctcgaacagtatcag
ggcgctgaactcgacccgaactggatgaagtcgatcgccaatctttcggcgcgtggctgg
aaggatttcgcccgcgaggaaaaccagacgatccgcgatatccgcggcgagatccagaac
cttgcgactgagaccggcatctcgatcgccgaattccgccgtatcgtgtccatggtccag
aagggcgagcgtgaagcgcgtatcgccaagaaggaaatggttgaggcaaacctgcgcctc
gtcatctcgatcgccaagaagtatacgaaccgcggcttgcagttcctcgacctcattcag
gaaggcaatatcggcctgatgaaggcggttgataagttcgagtatcgccgaggctacaag
ttctcgacctatgcgacatggtggattcgtcaggcgatcacccgctcgatcgccgaccag
gcccgcacgatccgtattccggtgcatatgatcgagacgatcaataagatcgttcgcaca
tcgcgccagatgctgcacgaaatcggccgcgagccgacgccggaagaactggccgaaaag
ctcgcaatgccgctcgaaaaggtccgcaaggtcctgaagatcgccaaggagccgatctcg
ctcgaaacccccgtgggtgacgaagaggattcgcatctcggcgacttcatcgaagacaag
aacgcgcttctgccgatcgacgccgccatccaggcgaacctgcgcgaaacgacgacccgt
gttctcgcctcgctcacgccgcgcgaagaacgcgtgctccgcatgcgcttcggcatcggc
atgaacaccgaccacacgctcgaagaagtcggccagcagttctcggtcacccgcgaacgt
atccgtcagatcgaggcaaaggcgctccgtaagctgaagcatccgagccggtcgcggaag
cttcggagcttcctggacagctga
DBGET
integrated database retrieval system
