Agrobacterium sp. RAC06: BSY240_577
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Entry
BSY240_577 CDS
T04501
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
agc
Agrobacterium sp. RAC06
Pathway
agc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSY240_577 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agc03400
]
BSY240_577 (mfd)
Enzymes [BR:
agc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSY240_577 (mfd)
DNA repair and recombination proteins [BR:
agc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BSY240_577 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
SecA_DEAD
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AOG10212
UniProt:
A0AAI8D3U0
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All DBs
Position
611558..615067
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AA seq
1169 aa
AA seq
DB search
MSLIDVKRIVGAQSALTLSHVPDGMDAFILAELAREGKPVAYVVSDGQRLQNLEQTLSFA
APDIPVLSLPAWDCLPYDRVSPSADVSARRLAALSGLIALYLNPHPAIVLVTVNAMLQKV
APADVIDSLGFSAKPGNQVRMDDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGAE
EPVRLDFFGDTLESIRSFDPASQRTIAQVRSLDLNPMSEVTLTPESISRFRKNYLSLFGA
ATRDDALYAAVSEGRRYAGMEHWLPMFYDKLETTFDYLRGFRMVTDHTVREAAEERAKLI
RDYYEARLNSATPGKGHLAQGTPYKPVPPERLYLGAGEFGKALDAFDPIRITPFAEASGE
SRKVIEVEARPTPRWAKSANEASSEEGNRANVFGQAVTYIADKRAAGTKVVVSGWSEGSL
DRLLQVLNEHGLERLVPVAALKDVDKLKKGEAGTAVLSLEGGFETNNLVIVGEQDILGDR
MVRRSKRRKRAADFISEVAGIDEGSIVVHAEHGIGRFVGLRTIEAAGAPHACLELQYADE
AKLFLPVENIDLLSRYGGEATEVQLDKLGGGAWQMRKAKLKKRLLDMAGALIRIAAERMT
RSAPVLTTQEGLYDEFAARFPYDETEDQETAIESVRSDLGAGRPMDRLVCGDVGFGKTEV
ALRAAFIAAMNGIQVAVVVPTTLLARQHFKTFSERFRGLPIRVQQASRLVGTKELNLVKK
EVADGKTDIVVGTHALLGTGVNFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSAT
PIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCP
RLADLADVKSFLDENVPELKVAIAHGQMAAGELEDIMNAFYEGRYDVLLSTTIVESGLDV
PTANTLIVHRADMFGLAQLYQIRGRVGRSKVRAFALLTLPVNKVLTAGAERRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEVVDTGW
SPQIQVGTSVMIPENYVPDLHLRMALYRRLGELDDLREIDGFGAELIDRFGPMPIEVQHL
LKVVYIKALCRTANVEKLEAGPKGVVVQFRGKQFPNPAALVGYIAKQGSMAKIRADHSVF
LTRDLPTPEKRLAGAAVVMTQLAELAKAG
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgatcgatgtgaagcggattgtcggcgcacaatccgcgctgacgctttcccat
gtacccgacggcatggatgccttcatcctcgccgaactggcgcgtgaggggaaacccgtc
gcctatgtggtatccgacgggcagcggctgcagaacctcgagcagacactgagtttcgca
gcaccggacattccggtgctgagcctgccggcctgggactgtctgccttacgaccgcgtc
tcgccgtccgctgatgtttcggcccggcgattggcggcactatcgggtttgattgcgctc
tatctcaatccgcatccggcaatcgtgctggtgacggtcaatgccatgctgcagaaggtg
gcaccggctgatgtcatcgacagcctcggcttttcggcgaagcccggcaaccaggtgcgc
atggacgacattgctgcgcgtctggaacgcaacggtttcgaccgcgtcgcaacggtccgc
gaggtcggcgaattcgccgtgcgcggcggcattctcgatgttttcgtgcctggtgcggaa
gagcctgtgcgtctcgatttcttcggtgacacactcgaaagcatccgctccttcgatccg
gccagccagcgcacgatcgcacaggtccgttcgcttgatctcaacccgatgagcgaggtg
acgctgacgccggagagcatcagccgttttcgcaagaactatctctcgctctttggagcc
gcgacccgcgacgatgcgctctatgccgccgtctccgaggggcgccggtatgccggcatg
gagcattggctgccgatgttctacgacaagctggagactaccttcgattatctgcgcggc
ttccgtatggtcaccgaccataccgtgcgtgaggcagccgaagaacgcgccaagctgatc
cgcgactattacgaggctcgcctcaactcggcgacacccggcaagggccatctcgcccag
ggcacgccctacaagccagttccgccggagcggctctatctcggcgctggcgaattcggc
aaggcgctcgacgccttcgatccgatccgcatcacgccctttgccgaagccagtggcgag
agccgcaaggtgatcgaggtcgaggcacgaccgacaccgcgctgggcgaagtctgccaat
gaggcgagcagcgaagaaggcaatcgtgccaacgtcttcggccaggccgtcacctatatc
gctgacaagcgcgctgctggcaccaaggtcgtcgtgtccggttggtcggagggctcgctc
gatcgccttctgcaggtgttgaacgagcacggcctggagcggctggtgccggtcgcagca
cttaaagatgtcgacaagctgaagaagggggaggcaggcaccgccgttctcagcctcgaa
ggtggcttcgagacgaacaatctcgtcatcgtcggcgagcaggatatcctcggcgatcgc
atggtccgccgctcaaagcgccgaaagcgggccgccgatttcatctcggaagtcgccggc
atcgacgaaggctcgatcgttgtgcatgctgaacacggcatcggccgcttcgtcggtctg
cggaccatcgaggccgcgggtgccccgcatgcctgtcttgaattgcaatatgccgatgag
gccaagctcttcctgccggtcgaaaacatcgatcttctctcgcgctatggcggcgaggcg
accgaagtgcagctcgacaagttgggcggcggcgcctggcagatgcgcaaggccaagctc
aagaagcgcctgctcgacatggcgggtgccttgatccgcattgccgccgagcgcatgacc
cgttccgcaccggtgctgaccacacaggaaggcctttacgacgagtttgctgcccgcttc
ccctatgacgagactgaagaccaggagaccgcgatcgaatccgtccgctcggaccttggc
gccggccgtccgatggaccgcctcgtctgcggcgacgtcggcttcggcaagacggaagtg
gcgcttcgcgctgccttcatcgccgcgatgaacggtatccaggtcgccgtcgtcgtgccg
accacgctcttggcccgccagcatttcaagaccttctccgaacgcttccgcggcctgccc
atccgcgtccagcaggcctcgcgccttgtcggcaccaaggaactcaacctcgtcaagaag
gaagtggcagacggcaagaccgacatcgtcgtcggtacccatgcgctgctcggcacgggc
gtcaacttcgccaatctcggcctgctgatcatcgacgaggagcaacatttcggcgtcaag
cacaaggaacggctgaaggaactgaagtcggacgtgcacgtcctgacgctttcggccacg
cccatcccgcgcaccctgcagcttgccatgaccggcgtgcgcgaactctcgctgatcacc
acgccgccggtggaccgaatggcggtgcgcaccttcatctcgcctttcgatccgctcgtc
attcgcgagaccctgatgcgcgagcattatcgcggcggacaaagcttttatgtctgcccg
cgtctcgccgatctcgcggatgtgaaaagcttcctcgacgagaacgtgccggagctgaag
gtggcgatcgcccatggccagatggccgccggtgagctcgaagacatcatgaacgccttc
tacgagggccgctacgatgtgcttctttcgacgaccattgtcgaatccggcctcgacgtt
cccacggccaacacgctgatcgtccaccgtgccgacatgttcggtctcgcccagctctac
cagatccgtggccgcgtcggtcgctccaaggtccgcgcctttgcgctgctgacgctgccg
gtcaacaaggtgctgacggcaggtgccgaacggcgtctgaaggtcctgcagtcactcgat
acgctcggcgccggcttccagcttgccagccacgatctggatatccgtggcgcagggaac
ctgctcggcgaggagcagtccggccacatcaaggaagtcggtttcgagctctaccagcag
atgctggaagaggccgtcgccgaggtgaagggtgtggacgaggtggtcgataccggttgg
tcgccgcagatccaggtcggcacctcggtcatgatcccggaaaactatgtgccggatctg
catctgcgcatggcgctctatcgtcgcctcggcgaattggacgacctcagagagatcgac
ggattcggcgccgaattgatcgaccgcttcggcccgatgccgatcgaggttcagcacctg
ctcaaggtcgtctacatcaaggcgctgtgccgcacggccaatgtcgagaagctggaagcc
ggccccaagggcgtcgtcgtccagttccgcggcaagcagttcccgaacccggcagcactg
gtcggctatatcgccaagcagggcagcatggcaaagatcagggcggaccactcggtgttc
ctcacccgcgacctcccgacgccggaaaaacggctggcaggggctgcagtggtgatgacg
cagttggcggagttggcgaaggctggctga
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integrated database retrieval system
