Agrobacterium sp. RAC06: BSY240_996
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Entry
BSY240_996 CDS
T04501
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
agc
Agrobacterium sp. RAC06
Pathway
agc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BSY240_996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agc03021
]
BSY240_996
03400 DNA repair and recombination proteins [BR:
agc03400
]
BSY240_996
Enzymes [BR:
agc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BSY240_996
Transcription machinery [BR:
agc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BSY240_996
DNA repair and recombination proteins [BR:
agc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BSY240_996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AOG08192
UniProt:
A0AAI8GJT4
LinkDB
All DBs
Position
complement(1021028..1025239)
Genome browser
AA seq
1403 aa
AA seq
DB search
MNQEVMNLFNPTVPAQHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTSLKENQLLSEEEYMMAVDEFGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRAELAETTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDMVLGLYYLSIQNQNEPGEGMAFSDMGELHHALE
NKVVTLHAKIRGRFKTVDAEGNPVSKIYETTPGRMIIGELLPKNVNVPFETCNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFTHACKAGISFGKDDMIIPETKAKIVGDTETL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEDMMARIKAVEFDPETNRQKPMNAIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVNLVDCGTDKGLTMTAIVDAGQVVASIGARVLGRT
ALDDIDHPITGERIVDAGKMILEPDVIEIEKAGIQSIRIRSALTCEVQTGVCSICYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRN
MLRNSDGTLIAMGRSMAVMILDERGVERSSQRVAYGSKVFVDDGDKVKRGQRLAEWDPYT
RPIMTEVEGIVHFEDVVDGISVLEATDESTGITKRQVIDWRSTPRGTDLKPAIVIKDASG
NVLKVARGGEARFQLSVEAILSVEPGQKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVIIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSHYIVGDNVDRIELDDNNDRLVEEGKKPAYGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDTLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDDLILEERKK
GTGADVATPMLQNLAGESAPAAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaaccttttcaacccgacagtgccggctcagcacttcgattcc
atccggatctcgatcgcgagcccggaaaagatcctgtcgtggtcctacggcgagatcaag
aagccggaaaccatcaactaccgcacgttcaagcccgagcgtgacggcctcttctgcgcg
cgtatctttggaccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagttacgctgtcgcgcgttcgccgc
gagcgcatgggccacatcgagctcgcagccccggtcgcccatatctggttcctgaagtcg
ctgccgtcgcgcatctccacgctgttggacatgacgctgaaggatgtcgagcgcgttctc
tacttcgagaactacatcgtgaccgagccgggcctgacctcgctcaaggaaaaccagctg
ctctctgaagaagagtacatgatggccgtcgacgagttcggcgaagaccagttcaccgcc
atgatcggcgctgaagccatatacgagatgctggcctcgatgaacctcgagaagatcgct
ggcgatctgcgcgctgagcttgccgagaccacctcggatctcaagcagaagaagctgatg
aagcgcctgaagatcgtcgagaacttcatggagtcgggcaaccgtccggaatggatgatc
atgaaggtcgttccggtcatcccgccggacctgcgcccgctggtcccgctcgatggcggc
cgcttcgcgacgtctgacctgaacgatctctatcgtcgcgtcatcaaccgtaacaaccgt
ctgaagcgcctgatcgaactgcgcgctccgggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatctgtagacgcgctcttcgacaacggccgccgtggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgactattccggtcgttcggtcatcgtaacaggt
ccggaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctacgcccgcctggacgccaagggttactcctcgaccgtcaagcaggcgaag
aagctggttgaaaaggaaaagccggaagtctgggatatcctcgacgaggtcatccgcgag
catccggtcctgctgaaccgcgcaccgacgctgcaccgcctgggcatccaggccttcgaa
ccgatcctggtcgaaggcaaggccatccagctgcacccgctcgtctgcacggccttcaac
gccgacttcgatggtgaccagatggccgttcacgtgccgctgtcgctcgaagctcagctc
gaagcccgcgtcctgatgatgtcgacgaacaacatcctgcacccggccaacggtcagccg
atcatcgttccgtcgcaggacatggttctcggcctgtactatctgtcgatccagaaccag
aacgagccgggcgaaggcatggccttctccgacatgggcgaactgcaccacgctctggag
aacaaggtcgtcacgctgcacgccaagatccgtggccgcttcaagaccgtcgacgccgag
ggcaacccggtatcgaagatctatgagaccacgcctggtcgcatgatcatcggcgaactt
ctgccgaagaacgtcaacgtgcccttcgagacctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgccattgcggccagaaggacacggtcatcttc
tgcgaccgcatcatgcagctcggcttcacccacgcctgcaaggctggcatttcgttcggc
aaggacgacatgatcatcccggaaaccaaggcgaagatcgttggcgacaccgaaacgctg
gtcaaggaatacgagcagcagtacaacgacggcctgatcactcagggcgagaagtacaac
aaggtcgtcgacgcttggggcaaggccactgaaaaggtcgccgaagacatgatggcccgc
attaaggctgtcgagttcgatccggaaaccaaccgccagaagccgatgaacgccatctac
atgatgtctcactcgggtgctcgtggttcaccgaaccagatgcgtcagctgggcggcatg
cgtggcctcatggccaagccgtcgggcgaaatcatcgagacaccgatcatctcgaacttc
aaggaaggcctgaccgttaacgagtacttcaactcgacccacggtgcccgtaagggcctc
gcagacaccgctctgaagaccgcgaactccggttacctgacccgtcgtctcgtcgacgtg
gcccaggattgcatcgtcaacctcgtggattgcggcaccgacaagggcctcaccatgacg
gcgatcgtcgatgccggtcaggtggttgcctccatcggtgcccgcgttctcggtcgtacg
gccctcgatgatatcgatcatccgatcacgggtgagcgcatcgtcgatgccggcaagatg
atccttgagcccgatgtcatcgagatcgaaaaggctggtatccagtcgatccgcatccgt
tcggccctgacctgcgaagttcagaccggcgtttgctcgatctgctacggccgcgacctt
gcacgcggtacgcccgtcaacatgggcgaagccgtcggtgttatcgccgcacagtcgatc
ggtgagccgggcacccagcttaccatgcgtaccttccacttgggcggtaccgcgaccgtg
gtcgaccagtcgttcctggaggcctcgtacgaaggtacggtgcagatcaagaaccgcaac
atgctgcgcaattccgatggcaccctgatcgccatgggtcgctccatggcggtgatgatc
ctggacgagcgtggcgttgagcgttcgtctcagcgcgtggcctatggttcgaaggtcttc
gtcgacgatggcgacaaggtgaagcgcggccagcgtctggccgagtgggatccgtacaca
cgcccgatcatgacggaagtcgagggtatcgtgcatttcgaggacgtcgtcgacggtatc
tcggtgctcgaagccaccgacgagtcgaccggcatcaccaagcgtcaggttatcgactgg
cgttcgaccccgcgcggtacggacctcaagccggcaatcgtcatcaaggatgccagcggc
aatgttctgaaggttgcccgtggtggcgaagcccggttccagctgtcggttgaagcgatc
ctttcggtcgagcctggtcagaaggtttctcagggtgacgtgcttgcacgttcgccgttg
gaaagcgccaagaccaaggacatcaccggtggtctgccgcgcgttgccgaactgttcgaa
gcccgtcgtccgaaggaccatgccatcatcgctgagatcgatggtacgatccgcctcggc
cgcgactacaagaacaagcgtcgcgtcatcatcgagccggctgaagacggtgtcgagcct
gtcgaatacctgatcccgaagggcaagcccttccaccttcaggaaggcgactacatcgaa
aagggtgactacatcctcgacggtaacccggctccgcacgacatcctggcgatcaagggc
gtcgaggcacttgcctcgtacctggtcaacgaaatccaggaagtttaccgtctgcagggc
gttgtgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgag
atcaccgacgcgggcgacagccactacatcgtgggtgacaacgtcgaccgcatcgagctc
gacgacaacaacgaccgcctggtcgaagagggcaagaagccggcatacggcgatccggtc
cttctcggcatcaccaaggcctcgctgcagacgccgtcgttcatctcggccgcatccttc
caggaaaccaccaaggttctcacggaagctgcgatcgccggcaagaccgacacgttgcag
ggtctgaaggaaaacgtcatcgttggccgcctgatcccggccggtaccggtggtaccatg
acgcagatccgccgcatcgccacgtctcgcgacgacctcatcctcgaggaacgcaagaag
ggcaccggcgcagatgtcgcaacgccgatgctgcagaacctcgctggcgaaagcgcgcct
gctgccgagtaa
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integrated database retrieval system
