Anseongella ginsenosidimutans: FRZ59_00165
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Entry
FRZ59_00165 CDS
T06183
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
agd
Anseongella ginsenosidimutans
Brite
KEGG Orthology (KO) [BR:
agd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
agd03009
]
FRZ59_00165 (rlmD)
Enzymes [BR:
agd01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FRZ59_00165 (rlmD)
Ribosome biogenesis [BR:
agd03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FRZ59_00165 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_15
MTS
TRM5-TYW2_MTfase
Motif
Other DBs
NCBI-ProteinID:
QEC50923
LinkDB
All DBs
Position
complement(30471..31925)
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AA seq
484 aa
AA seq
DB search
MAIRRLKQPEQVKGLEIIDITEDGRGIGKSEGRVLFIDKAIPGDVADVELLRRKKSLFEG
RISRLEKESEHRRDPFCLHFGVCGGCKWQHLDYQAQLIYKQKQVSDALQRLAGIDASHIS
PIIPSPETVYYRNKLEFTFSNRRWLSAAEMSGGGEESTANPPENTANALGFHVPGRFDKI
INIDTCHLQSGLSDRIRNAVRQFALDNAMTFYDLRGHTGLLRNLIIRSTSTGELMVIVVF
ADDQPQAVSALLDHIKEEFPEITSLLYIINRKLNDTIYDQEVRVWNGRDHIIEQMEAPGG
AVRFKIGPKSFYQTNSRQAERLYQVVSDLAGFSGNEKVYDLYTGAGTIANFIAKQVDSVI
GIEYVEPAILDARENALLNGAGNTAFFAGDMKDVLTEEFVATNGRPDVIITDPPRAGMHP
GVVSRLLEIAPRKIVYVSCNPATQARDLLILKELYKVSRIQPVDMFPHTTHVENVLLLEH
NDLI
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggcaattcgcaggttaaagcagccggaacaggtaaaagggctggagatcattgatatt
acggaagatggaagaggcattgggaaatcggaaggacgggtgctttttatagataaagcc
ataccgggcgatgtcgctgatgtggagctgctgcgcagaaagaaatcactctttgaaggc
cgcatcagccggctggaaaaagagtcggaacatagaagggaccccttctgcctgcatttc
ggcgtctgcggcggatgcaaatggcagcacctggattaccaggcgcaattgatctacaag
caaaaacaggtaagcgatgccttgcaacgactggcaggaatcgatgccagtcatatttcg
cctattattccttctcccgaaacggtttattaccggaataaactggagtttactttttcc
aaccgccgctggctgtccgcggcggaaatgtctggcggtggggaggaaagcacagccaac
ccgccggaaaacaccgccaacgcgctgggttttcacgttccgggccgctttgacaagatc
atcaacatcgatacctgtcacctgcaaagcgggctatccgatcgcatacgcaacgccgta
aggcagttcgccctggataatgcaatgacattctatgatttgaggggacataccgggctt
ctccggaacctgatcatccggagtacttccacaggtgaactcatggtgatcgttgtattc
gcagatgaccagccccaggccgtttccgctcttttggatcatataaaggaagagttcccg
gagatcacctccctgctttacattattaaccggaagctgaacgatacgatatatgatcag
gaagttcgggtatggaacggaagagaccatatcattgagcagatggaagcccccggcggc
gcggtaaggtttaaaattggccctaagtctttttatcagaccaattcccggcaggcggag
cggctttaccaggtagtatccgatcttgcgggcttcagcggcaatgaaaaggtgtacgat
ctctatacgggcgcgggaactattgcaaattttattgcaaaacaggtggattcggtgatt
gggatagaatacgtggagcctgctattctggatgcacgggagaacgctcttcttaacggc
gccgggaacacggcctttttcgccggcgacatgaaagacgtgcttacggaagagtttgtg
gccactaacggccgtcccgacgtgatcattactgatccgccaagggcgggcatgcatccg
ggggtggtgagccgcctgctggagatcgctccgcggaaaatagtgtatgttagctgcaac
ccggccacccaggccagggacctgttgatcctgaaggagctatacaaggtaagccgtatt
cagccggttgacatgttccctcataccacgcatgtggaaaacgtgctattgcttgaacat
aatgatttgatttaa
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