Anseongella ginsenosidimutans: FRZ59_02140
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Entry
FRZ59_02140 CDS
T06183
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
agd
Anseongella ginsenosidimutans
Pathway
agd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FRZ59_02140 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agd03400
]
FRZ59_02140 (mfd)
Enzymes [BR:
agd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FRZ59_02140 (mfd)
DNA repair and recombination proteins [BR:
agd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FRZ59_02140 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QEC51267
LinkDB
All DBs
Position
496685..500050
Genome browser
AA seq
1121 aa
AA seq
DB search
MQDISGMLKAYTADRRTGELSSALSKARARVHLKGLIGSSDAWVASALFQSAPYTGVFVL
ADREEATYFLNDLENIAGKKALFFPASCRKPFDFSLPDSYGILQRTDALNELQQGNAHRL
IVTYPEALGEKVISHQALEQNTLEIRLGDKLDIAFVNEFLSEYGFERVDFVYEAGQFSIR
GGIVDVFSFSHDLPYRVEFFGDQVESIRSFDIESQLSEKKLARITIVPNIQSDLLKNNNT
CFTDFLEQEAFFWFKDVEFCFESLEKGTKKAREAYKKTGADEIAVHPEWLDPDSLYEEAK
ILRGFTEQFRTVEFGKQFHYKPNEVLQYQMQPQPSFNKDFEFLRHTLVKNQEAGIRNLIF
TDSPRQSERLYSIFNDLPGTEKDAPVPFSTVQLAMREGFVDLDLQVACYTDHQIFDRYYK
YRLRKGYSRSQAITLKELRELKPGDFITHIDHGIGKYAGLEKFESDGRVQEMIRLVYADN
DLLYVNINSLNRISRYTGKEGTAPKLHKLGSDTWDKLKTKTKKKVKDIARDLIKLYALRK
SQEGFGFMPDTYLQAELEASFIYEDTPDQEKASADVKKDMEEPHPMDRLICGDVGFGKTE
IAVRAAFKAVNDSKQVAILVPTTILALQHYRTFSERLKGLPCNIDYINRFKSARQIRETL
EKVENGKIDIIIGTHRLVSKDVKFKDLGLLIVDEEQKFGVTVKEKLKKLRVNVDTLTLTA
TPIPRTLHFSLMGARDLSIISTPPPNRQPVVTELHVFNETLIREGIEFEVERGGQVFFIH
NRISDIQEIAGLIRRLCPDAKVAVGHGQMEGEELENIMLNFIEGRYDVLVSTTIVESGLD
VPNANTIFIHNAHYFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTPEARKRLSAIEEF
SELGSGFNVAMRDLDIRGAGNLLGAEQSGFIAEIGYEMYHKILDEAIQELKEEEFKDLFK
DEKPRPFISFTQVDTDQEMHIPDEYVSSIAERYNLYTEISRIADETQLQEFAAKLVDRFG
PLPAQVEQLFDAMRLQWIARETGFEKISLKNNKLRGSFVNDPASGYFQSEKFMQVLKYVQ
SHPQRSRLKEGKKGLSLTFDHINDIHGAIELLEEVNNPVYA
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacatttccggaatgctaaaagcctataccgccgacaggcggacaggcgaactt
tcatcggccctgtctaaggcaagggcacgcgttcatctgaaaggccttatcggctcttca
gatgcatgggtagcgtctgccctttttcagagcgccccttataccggggtgttcgtgctg
gccgaccgcgaagaagctacttattttttaaacgacctggaaaacatcgcgggcaaaaaa
gccctgttcttcccggcatcctgcaggaagccctttgatttcagcctgcctgacagctac
ggcattttgcagcgtaccgacgcattgaatgagctgcagcagggcaatgcccaccggctc
attgtgacctaccccgaagccctgggcgaaaaggtgatcagccaccaggccctcgaacaa
aacaccctggaaattcgcctgggcgacaagctggatattgcttttgtgaatgaatttctt
agcgaatacggctttgagcgggttgattttgtctacgaagccggccagttttccattcgg
ggagggatcgtggatgtcttttctttttcacacgacctgccttaccgggtggaattcttc
ggcgatcaggtggaaagcatccgcagttttgatattgagagccagctttcggaaaaaaaa
ctggcccggatcaccatcgtgcccaatatccagtcagacctgcttaaaaacaataatacc
tgctttaccgattttttggaacaggaagctttcttctggttcaaagacgtggaattttgc
ttcgagagccttgaaaagggcacgaaaaaggcccgggaagcctataaaaaaaccggtgca
gatgaaatagccgttcatcccgaatggctcgaccctgattccctttatgaagaagctaag
atcctgcggggatttacggagcaattccgaacggtcgaattcgggaagcaattccattat
aaaccgaacgaggtgctgcagtaccagatgcagccccagccctccttcaacaaggatttc
gaatttttacgtcatacgctggtgaaaaaccaggaggccgggatcaggaacctgatcttt
accgacagcccgcgccagagcgaacggctttattctatctttaacgacctgccgggaacg
gagaaagatgcgcctgtcccgttcagcacggtgcagctggctatgcgggaaggctttgtt
gacctggacctgcaggtagcctgttatacggatcaccagatctttgaccgttattataaa
taccgcctgcgaaaaggttattcacgctctcaggccatcacgctgaaagaactcagggaa
ctgaaacctggcgactttattacccatatagatcatggcatcggaaaatacgccggcctg
gaaaaattcgagagtgacggcagggtgcaggaaatgatccgcctggtatacgccgataac
gacctgctgtacgtcaacatcaattcccttaaccgcatttcccgctatacgggaaaagaa
ggcacagccccgaaactgcacaagctgggaagcgatacctgggataagctgaagaccaag
acaaaaaaaaaggttaaggacattgcccgcgacctgatcaaattatatgccctgcgaaaa
tcccaggagggctttggcttcatgccggacacctatcttcaggccgaactcgaagcctcc
tttatttatgaagatacgcccgaccaggaaaaggccagcgctgatgtaaaaaaagacatg
gaagagccacatcccatggaccgccttatttgcggggacgtgggtttcggtaaaactgaa
atagcggtaagggcggctttcaaggcggtgaacgatagtaagcaggtagccatcctggtg
cctaccaccatcctggcgctgcagcattaccggaccttcagcgaacgcctgaaggggctt
ccctgcaatatcgattatatcaaccggtttaaaagtgccaggcaaatccgggaaaccctt
gaaaaagtggaaaacgggaaaatcgacattatcatcgggacgcaccgcctggtaagcaag
gacgtaaaattcaaggacctgggcttgctgatcgttgatgaagaacaaaaattcggggtt
acggtcaaggaaaagctgaaaaagctgcgggtaaacgtggacacgctcaccctgacggcc
acgccgattccacgaacccttcacttttcactgatgggcgcgcgggacctgtcgatcatc
agcacgcctccccccaaccgccagccggtagttacggaacttcatgtttttaacgagacc
ctgatccgggaaggcattgagtttgaagtggaacgcgggggccaggtgttcttcatccat
aatcgcatcagcgatatacaggaaattgccgggctgatccggcggctttgcccagatgca
aaggtagccgtagggcatggccagatggaaggagaagaacttgagaatattatgctcaac
ttcattgaaggacgatacgatgtcctggtttccacgaccatcgtagagtcggggctggac
gtaccaaacgccaatacgattttcatccataatgctcattatttcggcctgagcgacctg
catcagatgcgcggccgtgtggggcggtcgaacaaaaaagcattctgttacttgctgagt
cctcccctttccacccttaccccggaagcccgtaagcgcctgagcgccatcgaggagttc
tccgaactgggtagcggttttaatgtagctatgcgcgacctggacatcaggggagccggc
aacttgctgggagccgaacaaagcggctttattgccgagatcggctatgaaatgtatcat
aaaatactggatgaagccatccaggaactcaaggaggaagaattcaaagacctcttcaag
gatgaaaaaccgcggccatttatcagctttacccaggtagataccgatcaggaaatgcat
attcccgacgaatatgttagcagcatagccgaacgctataatttatacactgaaatttcc
cgcatcgcggacgaaactcagctgcaggaatttgccgccaaactggtggaccgcttcggc
ccgctgcctgcccaggtggagcagttatttgacgccatgcgtttgcaatggatagcccgg
gaaacgggtttcgagaaaatttcccttaaaaacaataagctgcgggggagctttgtcaat
gatcccgcttccgggtattttcagtcggaaaaattcatgcaggtattaaaatacgttcag
agccacccgcagcggtcccgcctgaaagaaggaaaaaagggcctcagcctcacgtttgac
cacattaatgacattcacggggccattgaactgctggaagaagtaaataacccggtgtat
gcctga
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