Anseongella ginsenosidimutans: FRZ59_12900
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Entry
FRZ59_12900 CDS
T06183
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
agd
Anseongella ginsenosidimutans
Pathway
agd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRZ59_12900 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agd03019
]
FRZ59_12900 (rnr)
03016 Transfer RNA biogenesis [BR:
agd03016
]
FRZ59_12900 (rnr)
Enzymes [BR:
agd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FRZ59_12900 (rnr)
Messenger RNA biogenesis [BR:
agd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FRZ59_12900 (rnr)
Transfer RNA biogenesis [BR:
agd03016
]
Prokaryotic type
tRNA degradation factors
FRZ59_12900 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
OB_RNR_1st
OB_cyt-4
Motif
Other DBs
NCBI-ProteinID:
QEC53146
LinkDB
All DBs
Position
3122624..3124762
Genome browser
AA seq
712 aa
AA seq
DB search
MANKSKQLKGLKQVFTQLVINILAKSSGKSLNYKQVSSALNITDAETREVILEILKDEAK
EGTFREVSKGKFQISDMKTYVTGVIDMTATGSAYVVSDELEDDVFIAPRKLRNALHKDKV
KVFVYERKGGKKQIEGEVVEILERSKKTFTGQLVVSKNFAFLEPDDRKMLHDIFIPLENS
KGGKDGQKAVARITQWPEGAKNPVGEIVEILGSPGENNTEMNAILADFGFATSYPESGIR
EAEAFDGKIPSGEIKNRRDFRKITTFTIDPADAKDFDDAISFRKLENGNYEIGVHIADVT
YYVKPGSELDREAEERGTSVYLVDRVIPMLPERLSNDLCSLVPKQDRLCFAAVFELDDKA
RVLNEWFGRTVIHSNRRFSYEEAQMVLDTGKGDFAGELLKLNELAYILREQRFKNGAINF
ETTEVKFRLDEKGVPLGVYVKERKDTHKLIEDFMLLANRLVARFIGTRGKGKNKPPFVYR
SHDAPDAENIATFAQFAEKFGYKISTKSTREISRSLNFLMEDVVGRKEQNVLTHLAIRAM
SKAKYTTKQTSHYGLAFDYYTHFTSPIRRYPDVMVHRLLAHYLDGGKPVDAAELEPRCVH
ASEMEKRAADAERASVKYKQAEYLQDNVGEVYQGVISGLTEWGMYVEIIENKCEGMVRLR
EIDDDFYVLDEKNYCLIGQRKKKKYQLGDEVKVRVKNVNLVKRQIDFKIVMQ
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggcgaataagagtaaacaattgaagggcctcaagcaggtttttactcagttggtaatt
aatattttagcgaaaagctccggcaaatcgcttaattataagcaggtgagttcagcgctg
aatatcactgatgctgaaacgcgggaagtgatcctggagatactcaaggatgaagcaaag
gagggaacgttcagggaagtttcgaaaggaaagttccagatcagcgatatgaaaacttac
gtgaccggtgtgattgacatgacagcaaccggttctgcctatgttgtttccgatgaattg
gaggacgatgtcttcatcgctccccgtaaactccggaatgccctgcataaggataaagta
aaggtatttgtttacgaacgaaaggggggcaaaaagcaaatagaaggggaggtggtggag
atccttgagcggtctaaaaagacgtttaccgggcagctcgtcgtttcaaagaattttgct
ttcctggaaccggatgaccggaagatgctgcacgatatttttatcccgcttgagaacagc
aagggaggaaaagacgggcagaaagccgtagcccgtattactcaatggccggaaggtgcg
aaaaacccggtgggggagatcgtggagatattgggaagcccgggcgagaacaataccgaa
atgaatgctattctggccgatttcggatttgcgacgtcttacccggaatcaggaatcagg
gaagcggaagcttttgacggcaaaattccttccggagagatcaaaaaccgccgtgacttc
aggaaaataaccacctttaccattgacccggccgatgcaaaagactttgacgacgctatt
tctttccgcaaacttgaaaacggaaattatgagataggcgtccatattgctgacgttacc
tattatgtcaagcccggatcggagcttgaccgggaggcggaagagcggggcacttccgtt
tatttggttgaccgggtgattcccatgcttcccgagcggctttccaatgatctttgttca
ttggtgcctaagcaggatcgcttgtgctttgccgctgtatttgaactggatgataaagcc
cgcgttctcaatgaatggttcgggcgtacggttattcattccaaccggagattcagttat
gaagaggcccagatggtcctggataccggaaaaggagatttcgccggtgaactgctgaag
ctgaacgaactggcttatattctgcgcgaacagcgctttaagaatggggccattaacttc
gaaaccacggaggtgaaatttcgccttgacgaaaaaggcgttcccctgggcgtatacgtg
aaggaacgtaaagacacacataagcttattgaagattttatgctactggcaaaccgcctg
gtggcccgctttataggaacccggggcaaaggcaagaataagcctcccttcgtgtaccgg
agccatgatgcgcctgatgcggaaaatattgccacatttgcccagtttgcggaaaaattc
ggatataagatcagtacgaaatccacccgtgagatttcccgttcccttaattttttaatg
gaagatgtcgtgggcaggaaagagcagaacgtacttacgcacctggccatccgggcgatg
tccaaggcaaagtacaccacgaagcaaaccagccactacggattggctttcgattattat
acacactttacttcgcccatcaggcggtatcccgatgtcatggttcaccggctgcttgcg
cattaccttgacggcgggaaacccgtagacgccgctgagctggagccgcgctgcgtacat
gcttccgaaatggaaaagcgggcggcggatgccgaacgtgcctcggttaaatataaacag
gcggaataccttcaggataacgtaggagaggtttaccagggcgttatttccgggctcacg
gaatggggaatgtatgtggagatcatagaaaacaaatgcgagggtatggtgcgcctgagg
gaaatagacgatgatttttacgtgctggatgaaaagaactactgccttatcgggcagcgg
aaaaagaaaaagtaccagcttggcgatgaagtgaaggtccgtgttaaaaatgtaaattta
gtaaaacggcagatcgattttaaaatcgtcatgcagtaa
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