Archangium gephyra: AA314_03647
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Entry
AA314_03647 CDS
T03948
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
age
Archangium gephyra
Brite
KEGG Orthology (KO) [BR:
age00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
age03016
]
AA314_03647
Enzymes [BR:
age01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AA314_03647
Transfer RNA biogenesis [BR:
age03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AA314_03647
Prokaryotic type
tRNA splicing ligases
AA314_03647
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Rnk_N
Motif
Other DBs
NCBI-ProteinID:
AKJ02021
UniProt:
A0AAC8Q6X5
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All DBs
Position
4443708..4444865
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AA seq
385 aa
AA seq
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MMPRVLESPPVALPILAWAREVPPGAVKQLQHIASQPYVVEHVAAMPDVHVAQGVAVGTV
FATEHTVVPGALGGDLGCGVSAHRFAFPAASLGRADLERLLSAVARRVPVGDAVHRGAGL
PLPPELQAASLSTHRLQKEWERLAPRHLATLGGGNHFLELDRDAGGDLWLLIHTGSRGIG
GAIASHHVRVAATRGEGSLPGLRTDSSEGAACLADIAWACRFARANRDVLAARAVEVLAE
ALGCEPEPGASVDVHHNHVEAETHLGRTLLVHRKGAVGLEAGQRGLIPGSMGTASYVVEG
RGEARAFRSCSHGAGRVLTRSEARARIRPAALEQALRRVVFDRGRVESLVEEAPAAYRDI
AEVLEDEEDLVTPVLRLTPIAVLKG
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctcgtgtcctcgagagcccgcccgtggccctgcccatcctcgcctgggcccgc
gaggtgccgccgggcgcggtgaagcagctccagcacatcgccagccagccgtacgtggtg
gagcacgtggcggcgatgccggacgtccatgtggcgcagggggtggccgtgggcaccgtc
ttcgccaccgagcacactgttgttccgggggcgctcgggggagacctcgggtgcggcgtc
agtgcccaccggttcgccttcccggcggcgtcactggggcgggcggacctggagcggctg
ctgtcggccgtggcgcgccgggtgccggtgggagacgcggtgcaccggggcgcgggcctg
cctctgcccccggagctccaggccgcgagcctctccacccatcggctccagaaggagtgg
gagcgcctcgcgccgcggcacctggccacgctcgggggcggcaaccacttcctcgagctg
gaccgggacgcggggggagacctgtggctgctcatccacacgggctcacggggcattggc
ggcgccattgcctcgcaccacgtgcgggtggccgccacgcggggagagggctcgctgccg
ggcctgcgcaccgactcgtccgagggggccgcgtgcctggcggacatcgcctgggcctgc
cgtttcgcccgcgccaaccgggacgtgctcgccgcgcgagcggtggaggtgctggccgag
gcactcggctgcgagccggagccgggcgcgagcgtggacgtgcaccacaaccacgtggag
gcggagacgcacctgggccgcacgctgctcgtgcaccgcaagggcgcggtggggctggag
gccgggcagcggggcctcattcctggctcgatggggacggcctcgtacgtggtggagggg
aggggagaggcgagggccttccgctcctgctcacacggggcggggcgcgtgctcacccgg
agcgaggcccgggcgcgcatccgcccggcggcgctggagcaggcgctgcgccgggtggtg
ttcgaccggggccgggtggagtcgctggtggaggaggctccggcggcctaccgggacatc
gcggaggtgctggaggacgaggaggacctggtgacgcccgttctgcggctcacacccatc
gccgtgctcaagggctga
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