Archangium gephyra: AA314_06196
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Entry
AA314_06196 CDS
T03948
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
age
Archangium gephyra
Pathway
age03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
age00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AA314_06196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
age03019
]
AA314_06196
03016 Transfer RNA biogenesis [BR:
age03016
]
AA314_06196
Enzymes [BR:
age01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AA314_06196
Messenger RNA biogenesis [BR:
age03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AA314_06196
Transfer RNA biogenesis [BR:
age03016
]
Prokaryotic type
tRNA degradation factors
AA314_06196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AKJ04570
UniProt:
A0AAC8QBG3
LinkDB
All DBs
Position
complement(7799960..7803418)
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AA seq
1152 aa
AA seq
DB search
MTDLPRDVKRHLAESKHPLGIQELLKLTHLHPGQQTQLKRTLRDMVRSGELLKEGKRFRL
RGERPAPAGGGGDERRPGGPREDVRAEPDARFAPKGRFSREGTPEPRGRFVREGRMEPRS
RFARDERGAPPSRGPSEPQGPESRSRFARDDRGAPGPRGRFEPRGGSGPQRGGYGQQQQR
PGPGGGRPEKAGRFEPRGRFARDERGGPGKRDGGFAQDRRPGRGGRFEREERFAPRGRGG
RDRSEGQETSTLEGILHVHRDGYGFVHPSSGEGDNIFLPPQEASRALDNDRVIVEAWGRP
GRMEGRLLQVVGRTRQLAVGTYVEQGKRQAFVVPYDKNLQTQGNIRVPPTQMARDGDVVK
VRLGIGAELLEPGEGLYGEVAGSIGKPGDPSNEVLSIAYSQGFSDEFPPEVMDEADRILP
TVSEEEARGENRRDLRQMALVTIDGEDARDFDDAVYTEPHPQGFRLVVAIADVTHYVREG
TAIDAEALRRATSVYLPDRVLPMLPERLSNGICSLRPDEDRLCMVADMVLNTRGHLVSSD
IYPGVMRSHARCTYNEVQDVLDGKDVPHRNAFKPQFERLMELARVLMRMRKERGAIDFNL
PEHKVMMGEDGMPARMEKRERKDSHRLIEECMLAANEAVAKFFADLGLPSVYRYHGEPDE
EKLAIFAQLAQAYGFRLQAEEISPKALNAFMAQLQGHPEERALNQLLLRSMMQAVYTASD
VGHYGLAAEYYLHFTSPIRRYPDLLVHRLLKAHWDRGGQERSPAQLEREEQRLEDMASQS
SERERAAMQVEREVVSYYAALMMKDRLGEEFVATVAGLVEFGFFVELDEVHVEGLVRADS
LGFGTRFDKNLHSFTLPGGFRVRVGQKARVRLVNVNLALRRIEFDALEVAGQTITAVQET
GREEREAQKQQAWQERKKANRAGRERGREERWGRPPVRTELSLAEAEALRKREAEEARRA
AEAVETPEVAPRPVERRPEAPEAQEQAAAPVPTVADRIRALAAQGAQPQAEPVRAVPPTR
RKKAAAAAEEKPARAKRAAGAQKKTAARPAVKKAAAGGAGAKKKAPAAKKATAAKKAPAV
KKAAVAKKAPAAKKAPAAKKTARAPAAKKAPAMKKQAPAVKARAASKARPTGGAKAKGAA
KKAAPARKAKKK
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatcttcctcgtgacgtgaagcgacacctggccgagtccaagcacccgctcggc
atccaggaactgttgaagctcacccatctgcaccccgggcagcagacccagctcaagcgc
accctgcgggacatggtgcgcagcggcgagctgctcaaggagggcaagcgcttccgcctg
cggggcgagcggcctgctccggcggggggtgggggggacgagcgccggcccggtggcccc
cgggaggacgtgcgcgccgagccggatgcgcgtttcgcccccaagggacgcttctcgcgg
gagggcacgccggagccccggggccgtttcgtgcgcgagggccgcatggagccccggagc
cgcttcgcccgggacgagcgcggagcacctccgtcgcgtggcccctcggagcctcagggg
cccgagtcccggagccgcttcgcccgggacgaccggggcgctcccggtccgcgcggccgt
ttcgagccccgggggggttccggtccccagcgcggtggctacggccagcagcagcagcgg
cccggtcccgggggcggacgccccgagaaggcgggccgtttcgagccccggggccgtttc
gcccgggatgagcgcggcgggcccggcaagcgggacggcggtttcgcgcaggatcgccgg
ccgggacggggagggcgcttcgagcgcgaggagcgtttcgcgccccgaggccgcggaggg
cgtgaccggagcgagggtcaggagacgtccaccctcgagggcatcctgcatgtgcaccgc
gacggctacggcttcgtccaccccagctcgggcgagggcgacaacatcttcctgccgccc
caggaggcctcgcgggcgctcgacaatgatcgggtgatcgtcgaggcctggggccgtccc
ggacgcatggagggccgtctgctgcaggtggtcggccgcacccggcagctcgccgtgggc
acctacgtggagcagggcaagcgccaggcgttcgtcgtcccctacgacaagaacctccag
acgcagggcaacatccgtgtcccgcccacccagatggcgcgggatggggacgtggtgaag
gtccggctcggcatcggcgcggagctgctggagccgggcgagggcctctatggcgaggtc
gccggctccatcggcaagcccggagacccgagcaacgaggtgctctccatcgcctactcg
cagggcttctccgacgagttccctcccgaggtcatggacgaggcggaccgcatcctccca
acggtgagcgaggaggaggcccgtggggagaaccgccgcgacctgcggcagatggcgctc
gtcaccatcgacggcgaggacgcccgcgacttcgacgacgccgtctacaccgagccccac
ccccagggcttccggctcgtggtggccatcgccgacgtgacgcactacgtgcgcgagggc
accgcgatcgacgccgaggccctgcgccgcgccacctccgtctacctgccggaccgcgtg
ttgcccatgctccccgagcgcctcagcaacggcatctgctcgctgcgtcccgacgaggac
cggctgtgcatggtggccgacatggtgctgaatacgcgcgggcacctggtctccagcgac
atctacccgggcgtcatgcgcagccacgcccgctgcacctacaacgaggtgcaggacgtg
ctggacggcaaggacgtcccccaccgcaacgccttcaagccccagttcgagcggctcatg
gagctggcccgggtgttgatgcgcatgcgcaaggagcgcggcgccatcgacttcaacctg
cccgagcacaaggtgatgatgggcgaggacggcatgcccgcccgcatggagaagcgcgag
cgcaaggacagccaccggctcatcgaggagtgcatgctcgccgccaacgaggcggtggcg
aagttcttcgccgacctgggcctgcccagcgtctaccgctaccacggtgagcccgacgag
gagaagctggccatcttcgcccagctcgcccaggcctacggcttccgcctccaggccgag
gagatctccccgaaggccctcaacgccttcatggcccagctccagggccaccccgaggag
cgcgccctcaaccagcttctgctgcgctcgatgatgcaggccgtctacacggcctccgac
gtcggccactacggcctggccgccgagtactacctccacttcacctcgcccatccgccgc
tacccggacctgctcgtccaccggttgctcaaggcgcactgggaccgcggtggacaggag
cgctcccccgcccagctcgagcgcgaggagcagcggctggaggacatggcctcgcagagc
tccgagcgcgagcgcgccgccatgcaggtggagcgcgaggtcgtctcctactacgcggcc
ctgatgatgaaggaccgcctgggcgaggagttcgtcgccaccgtcgccgggctcgtcgag
ttcggcttcttcgtggagctcgacgaggtgcacgtggaggggctcgtccgcgccgactcg
ctcggcttcggcacccgcttcgacaagaacctgcactccttcacgctgccgggcggcttc
cgcgtccgcgtgggacagaaggcccgggtgcggctcgtcaacgtgaacctggccctgcgg
cgcatcgagttcgacgcgctcgaggtcgctggccagaccatcacggccgtccaggagacc
ggccgggaggagcgcgaggcgcagaagcagcaggcctggcaggagcgcaagaaggccaac
cgtgccggacgcgagcggggccgggaagagcgctggggccgtccccccgtgcggaccgag
ctctccctggccgaggccgaggccctgcggaagcgggaggccgaggaggcgcggcgggcc
gccgaagcggtggagacgccggaggtggcgcctcgccccgtggagcggcgtcccgaggct
cccgaggcccaggagcaggccgccgccccggtgccgacggtcgcggatcgcatccgcgcc
ctcgccgcacagggagcgcaaccccaggccgagcccgtccgggccgtgcctcccacgcgg
cgcaagaaggccgccgcggccgccgaggagaagcccgcgcgtgcgaagcgggccgccggg
gcccagaagaagaccgctgcgcgccccgccgtgaagaaggccgcggcgggtggggcaggc
gcgaagaagaaggccccggctgccaagaaggccacggccgccaagaaggctcccgccgtg
aagaaggccgcggttgcgaagaaggctcccgccgcgaagaaggctcccgccgcgaagaag
acggctcgggctccggccgccaagaaggcgcccgccatgaagaagcaggccccggccgtg
aaggcccgtgccgcgtcgaaggcccgccccacgggtggcgccaaggcgaagggggccgcg
aagaaggccgctcccgcgcgcaaggcgaagaagaagtag
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