Astur gentilis (Northern goshawk): 126034898
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Entry
126034898 CDS
T08649
Name
(RefSeq) LOW QUALITY PROTEIN: helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
agen
Astur gentilis (Northern goshawk)
Pathway
agen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126034898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agen03019
]
126034898
Enzymes [BR:
agen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126034898
Messenger RNA biogenesis [BR:
agen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
126034898
mRNA degradation factors
3'-5' decay
Ski complex
126034898
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
DUF3516
nSTAND3
Motif
Other DBs
NCBI-GeneID:
126034898
NCBI-ProteinID:
XP_049648739
LinkDB
All DBs
Position
36:488772..500424
Genome browser
AA seq
1244 aa
AA seq
DB search
MELERIALPPRGPLELPLALLELGCAGRFELLTGPPGPGEAPPPRSTLPQGLPPFTLPLV
SELEQRFLGTPEWLPPHQHERARRCWQRAPEPRALFALEPTPVAGGLRAERDPHSGALRG
FTEELLPDVGLSAKNSLSLRRAPGPPGQSLRGNATNFPFWPGGLDEPSLEQIRTHGDEEE
DVDFETDLLVTPPGLKRGVDYKPPAARVGGPLSLSSLLETLDTFDLGGDEAEGGSGDTQP
PAGGSPPPALRHADSLEEVLLKVGAGPPPPPPEPPEEQWAIPIDASTPVEDFDQRIPDPA
FKWPFVPDPFQQQAVLCLEQGHSLLVAAHTSAGKTAVAEYAIALAQRHMTRTIYTSPIKA
LSNQKFRDFKMTFGDVGLLTGDVQLRPEASCLIMTTEILRSMLYNGSDVIRELEWVIFDE
VHYINDAERGVVWEEVLIMLPEHVKLILLSATIPNALEFAQWVGRTKRRRLRVISTRRRP
VPLEHFLYTGNSTRTRHQLFLLLDARGNFSTQGYYAAVEAKKERTSKHAQTFGAKQPTMG
GSGSGQDRGVWLALLGLLREREQLPVVAFTFSRSRCDEHADTLGSLDLVSSAEKGRIRLF
FQRCIARLRGSDRQLPQVLRMAELLQRGIGVHHGGVLPLLKEVVEMLFSQGLVKVLFATE
TFAMGVNMPARTVVFDSIRKHDGNNFRDLLPGEYVQMSGRAGRRGLDSTGTVIILCKGPV
PEMADLHRVMLGRPTRLQSQFRLTYSMILNLLRAQALRVEDMMRRSFSEFPLRRDAPAQE
RRVAELQRELAALGEPEAEGAMADLAPYHRAVQGLRQARALLQRRLAESVAGLRALAPGR
VVVVCTPKHRNALGLILQVSSEGSSRTFTTLVLCEKPPEQGGPAVDLPKVPDVPYPEDLL
LTRLFVPEGACGHVLEKLQPGDIAGVTAKTLRVNPERLLQELRPRQGPRPRSEPPGMEVG
AAVQELARLAGGPPGGLPLLDPVGTLQLRDPEAVEAATRARTLAASLGSFQCVHSPRFPQ
QYTQFATRQELLEQLEHLQFLLSDQSLLLLPEYHQRVAVLRALGYVAEGGAVALGGRLAS
LLSTHELVLTELLLGNVLAPLRPEESVALLSCMVCQGRGEAPPHVPPALHQGMEQVRAVA
QRVGQLQQECGLSQSVEEFVEQFSFSLVEVVYEWARGMPFADIARLAAVQEGAVVRCIQQ
LEEMCREVRQAARLVGESALAAKMEAASNMIKRDIVFAASLYTQ
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atggagctggagcggatcgcgctgcccccccgcgggcctctggagctgccgctggcgctg
ctggagctgggctgcgccggccgcttcgagctactgacgggacccccggggccgggggaa
gcccccccgccgcggtccacactgccccagggtctgccccccttcaccctccccctggtg
tcggagctggagcagcggtttttggggacccccgagtggctgcccccacaccagcatgag
cgggcccgcaggtgctggcagcgggcaccggagccccgggccctctttgcgctggagccc
accccagtggccggagggctgcgggccgagcgggacccccacagcggcgccctgaggggc
ttcactgaggagctgctgcctgacgtggggctctcagccaagaactcgttgtcgctgcgc
cgggcccccggcccccctgggcagagcctgcggggcaatgccaccaacttccccttctgg
ccagggggtctggacgagcccagcttggagcagatccgcacccacggggatgaggaggaa
gatgtcgattttgagactgacctgttggtgactccccccgggctgaaacgtggtgttgac
tacaaacccccagcggcaagggtgggggggcctctgtccctctccagcctcttggagacc
ctcgacacgttcgacctggggggggacgaggccgagggaggctcaggggacacccagccc
ccagcggggggcagccccccacctgccctgcgccatgccgacagcctggaggaggtgctg
ctgaaggtgggtgctggccccccgcccccccccccggagcccccagaggagcagtgggcc
atccccatcgacgccagcacccctgtggaggactttgaccagcgcatccctgaccccgct
ttcaagtggccctttgtgcccgaccccttccagcagcaggctgtgctgtgcctggagcag
ggccactcgctgctggtggccgcccacacctcggccggcaaaaccgccgtggctgagtac
gccatcgccctggcccagcgccacatgacccggaccatctacacctcccccatcaaggca
ctctccaaccagaagttccgggatttcaagatgacatttggggacgtgggtctgctgacg
ggggatgtgcagctgcgccccgaggcctcctgcctcatcatgaccaccgagatcctgcga
tcgatgctctacaacggttccgatgtcatccgggagctggagtgggtcattttcgatgag
gtgcattacatcaatgatgctgagcgcggcgtggtgtgggaggaggtgctgatcatgctg
cccgagcacgtcaagctcatcttgctcagtgccaccatccccaacgccctcgagttcgcc
cagtgggtcggccgcaccaagcgccggcgcctgcgggtgatcagcacgcggcggcgcccg
gtgcctctggagcattttctctacaccgggaacagcacccgcacccgccaccagctcttc
cttctccttgacgcccgcggcaacttcagcacccaggggtactacgcggccgtggaggcc
aagaaggaacgaaccagcaaacacgcgcagaccttcggagccaagcagcctaccatgggg
ggctccggctctgggcaggaccggggggtctggctggcattgctggggctgctgcgggag
cgggagcagttgccggtcgttgccttcaccttctcccgcagccggtgcgacgagcacgct
gacacgctgggctccctcgacctggtctccagcgccgagaagggtcggatccggctcttc
ttccagcgctgcatcgcccgcctgcgcggctccgaccgccagctgccgcaggtgctgcgc
atggcggagctgctgcagcgcggcatcggggtgcaccacggcggggtgctgcccctgctc
aaggaggtggtggagatgcttttcagccaggggctggtcaaggtgctcttcgccaccgag
accttcgccatgggggtgaacatgccggcccgcaccgttgtctttgactccatccgtaaa
cacgacggcaacaacttccgtgatctcctgcccggggagtacgtgcagatgtcagggcgt
gcggggcggcgggggttggattccaccggcaccgtcatcatcctctgcaaggggcccgtg
cccgagatggccgacctgcaccgcgtgatgctgggccgcccaacgcgcctgcagtcccag
ttccgcctgacctactccatgatcctcaacctgctgcgggcccaggcgctgcgtgtcgag
gacatgatgcggcgaagcttctctgagttccccctgcggcgcgatgccccggcgcaggag
cggcgtgtggcggagctgcagcgggagctggcagcgctgggggagccggaggctgagggg
gccatggctgacctggccccctaccaccgcgccgtgcaggggctgcgccaggcccgcgcc
ctgctccagcggcgcctggcagagtcggtggcgggactgcgggcgctggcgcccggccgg
gtggtggtggtctgcacccccaaacaccgcaacgcgctcggcctcattctccaggtgtcc
tcagaggggtccagccgcacctttaccacgctggtgctgtgcgagaagccccctgagcag
ggggggccggcggtggacctccccaaagtccccgatgtcccctaccccgaggacctgctg
ctcaccaggctctttgtgcccgagggtgcctgcggccatgtgctggagaagctgcagccc
ggggacatcgcgggggtcacggccaagaccctgcgggtgaaccctgagaggctcctgcag
gagctgcgcccccgccagggcccccgtcccagatcggagccccctgggatggaggtgggg
gcagcggtgcaggagctggcccggctggcgggggggcccccgggggggctccccctgctc
gacccggtggggaccttgcagctgcgggaccccgaggccgtggaggcggccacccgtgcc
cggaccctggccgcctcgctgggctccttccagtgcgtccacagcccccgcttcccccag
cagtacacccagttcgccacccgccaggagctgctggagcagttggagcatctccagttc
ctgctgtcggaccagtcgctgctgctgctgcccgagtaccaccagcgtgtggccgtgctg
cgggcgctggggtacgtggcagaggggggggcggtggcgctggggggtcgcctggcctcc
ctgctgagcacccacgagctggtgctgaccgagctgctgctggggaatgtcctggccccc
ctgcgccccgaggagagcgtcgccctgctctcctgcatggtctgccaggggcggggggag
gcccccccccatgtgccccccgccctccatcaggggatggagcaggtgcgggcggtggcg
cagcgcgtggggcagctgcagcaggagtgcggcctcagccagagcgtcgaggagtttgtc
gaacagttcagcttcagcctcgtcgaggtcgtctacgagtgggcccgtggcatgcccttc
gcggacatcgcccggctggcggcagtgcaggagggggccgtcgttcgctgcatccagcag
ctggaggagatgtgccgggaggttcgccaggccgcccggctggtgggggagtccgcgctg
gccgccaagatggaggccgcctccaacatgatcaagcgcgacatcgtctttgccgccagc
ctctacacccaataa
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