Astur gentilis (Northern goshawk): 126036445
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Entry
126036445 CDS
T08649
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
agen
Astur gentilis (Northern goshawk)
Pathway
agen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126036445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agen03019
]
126036445
03041 Spliceosome [BR:
agen03041
]
126036445
03009 Ribosome biogenesis [BR:
agen03009
]
126036445
03016 Transfer RNA biogenesis [BR:
agen03016
]
126036445
Enzymes [BR:
agen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126036445
Messenger RNA biogenesis [BR:
agen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
126036445
Spliceosome [BR:
agen03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
126036445
Complex C
U4/U6.U5 tri-SnRNP related factors
126036445
Ribosome biogenesis [BR:
agen03009
]
Eukaryotic type
Pre-60S particles
Helicases
126036445
Transfer RNA biogenesis [BR:
agen03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
126036445
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
126036445
NCBI-ProteinID:
XP_049652161
LinkDB
All DBs
Position
Z:complement(68869564..68921016)
Genome browser
AA seq
1035 aa
AA seq
DB search
MADAFGDELFSVFEEDSAAAAASGAKKSKAGAAEGARRPGRQLEEKSSVAVAGKPKREIE
IDGTEDAVLGKKPKLEDVVSEDANLADLMPQVKVQAVETVEGCTHEVALPADEVFTGLKP
RTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALRDKQRVIF
TSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVA
WVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVI
YTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGG
MKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVSN
LEGQYNKIAIPNEENVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEGD
DFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQ
VVPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKD
QGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQIAMDIKAAKRELKKARTVLQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATA
LLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLM
DVVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgttcggggacgagctcttcagtgtgtttgaggaggactcggccgccgct
gccgcctccggcgctaagaagagcaaagcgggcgccgccgaaggcgccaggagaccggga
agacaactggaagaaaaatcttcagtagctgtggcagggaagcccaaaagggaaatcgag
atcgatggtactgaagatgctgttttgggaaagaagccaaaattggaagacgttgtatca
gaagatgctaatctggcagacctgatgcctcaagtaaaggtgcaagctgtggaaactgtt
gaaggttgtacacatgaggttgcacttccagcagatgaagtcttcacaggtctgaagcca
agaactggaaaagctgcaaaagaatatccatttattcttgatgcctttcagagagaagct
attctttgtgtagataataaccagtctgtgttagtgtcagctcatacgtcagctggtaaa
actgtttgtgcagagtatgcaattgctttagctttaagggataaacagcgtgtgatattt
acaagtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcag
gatgttggtttgatgactggggatgtcaccattaatcctacagcttcttgtctggtaatg
acaactgagattttgagaagtatgctctacagaggttctgaggttatgcgagaagtcgca
tgggttatttttgatgaaatccactacatgagagattcagaacgtggtgtggtttgggaa
gagacaattattttgctccctgacaatgttcattatgtgttcctttctgcaactattcca
aatgcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatt
tacaccgactatcgacccactccactgcagcattatatattcccagcaggaggagatgga
ctccatctggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatg
caagtgcttagagatgcaggggacttagcaaaaggggaccagaagggcaggaaaggagga
atgaaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaagaaatttccaa
cctgtgattattttcagcttcagtaagaaagactgcgaagcctatgcacttcagatgaca
aagttagatttcaatacagatgaagaaaaaaagatggtagaagaagtgttcaataatgca
attgattgtctgtcagatgaagacaaaaagcttcctcaggttgagcatgtgcttcctctt
ctgaagcgaggaattggtatccatcatggtggtctacttcctatcttaaaagaaaccata
gaaattcttttctctgagggcctaataaaggccttatttgcaacggagacttttgcaatg
ggaattaatatgccagccaggactgtactatttacgagtgccagcaaatttgatggaaaa
gatttcagatggatatcctcaggtgaatatattcaaatgtcaggtcgtgcaggacgccga
ggtatggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaatt
ggcaagcagcttttgaagggttcagctgaccctttaaacagtgcattccacctgacgtac
aacatggtattgaacttgcttcgagtagaggaaatcaaccctgaatacatgttagaaaaa
tccttctatcagttccagcattacagaactattccagaaatagtagaaagagtgagtaat
ttggaaggacagtacaacaaaatagcaattcccaatgaagaaaatgtggtcatatactac
aaaatccgacagcagcttgcaaaactgggtaaagagattgaagaatatgttcacaaacca
aagtattgcttgccatttctacagccaggaaggctggtaaaggtgaagaacgaaggtgat
gactttggatggggagtggttgttaatttctctaagaaatcaaatgttaagccaaattct
ggtgaattggacccattatatgtagttgaagtgctactgcactgcagcaaagagagtttg
aaaaattctgctactgaggctgcaaagccagccagacctgatgagaaaggcgagatgcag
gttgttcctgttttggtacatctcctctcagctatcagcagtgtccgactttacataccg
aaagacctgaggcctattgacaacaggcaaagtgtgttaaaatctatacaggaagtacag
aagcgatttcctgatggagtaccattactagaccccattgatgacatgggcatcaaagat
caaggactgaaaaaagtaatccaaaaagtagaggcatttgagcataggatgtattcacat
cctcttcacaatgatcccaacttggaaactgtatacaaactttgtgaaaaaaaagcacag
attgctatggatattaaagcagcaaagcgagaactgaaaaaagccagaactgtcttacaa
atggatgaactcaaatgccgcaagcgtgttttgagaagactggggtttgccacgtcttca
gatgttattgagatgaaaggacgggtcgcttgtgaaatcagcagtgctgatgaactactc
ttgacagaaatgatgttcaatggtctcttcaatgacttatctgcagaacaggcaactgca
ctactaagctgtttcgtatttcaagagaattccagtgaaatgccaaaattgacagagcag
ttggcaggaccacttcggcaaatgcaggagtgtgcaaaaagaattgccaaggtgtcagca
gaagcaaaactagaaattgatgaagaaaattacttaaattctttcagacccaacctgatg
gatgttgtgtatacatgggcaaatggagctaactttgctcacatctgcaaaatgactgat
gtctttgaagggagcataattcggtgcatgagaaggctagaagaattgcttcggcagatg
tgccaggctgcaaaagccattggaaacacagagttggaaaataagtttgcagaggggatt
acaaaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
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