Astur gentilis (Northern goshawk): 126041359
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Entry
126041359 CDS
T08649
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
agen
Astur gentilis (Northern goshawk)
Pathway
agen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126041359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
agen03041
]
126041359
Enzymes [BR:
agen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126041359
Spliceosome [BR:
agen03041
]
Complex C
Other components
Step II factors
126041359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
PhoH
SRP54
SoDot-IcmSS
Microtub_bd
AAA_16
AAA_30
AAA_7
Motif
Other DBs
NCBI-GeneID:
126041359
NCBI-ProteinID:
XP_049662862
LinkDB
All DBs
Position
7:complement(44463581..44474054)
Genome browser
AA seq
1235 aa
AA seq
DB search
MAAASEESLHRLAGTSPEAEAGGLVLRRRSAAAEQHVFKAPAPRASLLGLDVLAAQKRRE
REEEAAGGKRSRVSSYKDWEEGRDEAGSPEEDEEEEAESGRRSRSARKDRHYRSVHVETP
SYTGGVSEEFWERSRQRERERREHGVFASSKEEKERKKEHSRDRDHDRKRDREERDRSRH
SSRSERDGSLERSSRRSEPESPRHRPKDAATPSRSSWEEDDSGYSSARRSQWESPSPMPS
YRDSERSHRASSLRDMDRRDRDRSVRSKYSDKTPLPTPSYKYNEWADDRRHLGSTPRLSR
GRGRRADGEECIAFETEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEEYVKKRE
QHLHKQRQKRISAQRRQINEDNERWETNRMLTSGVVHRIEVDEDFEEDNSAKVHLLVHNL
VPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQLVRKHREQKERKRAQHKHWELAG
TKLGDIMGIKKEEEKDEMVTEDGKVDYRAEQKFAEHMKEKSEASSEFAKKKSILEQRQYL
PIFAVQQELLSILRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMS
VAKRVSEEMGVRLGEEVGYAIRFEDCTSENTVIKYMTDGILLRESLREADLDNYSAIIMD
EAHERSLNTDVLFGLLREVVARRSDLKLVVTSATMDADKFASFFGNVPIFHIPGRTFPVD
ILFSKTPQEDYVEAAVKQALQVHLSGAPGDILVFMPGQEDIEVTSEQIVEHLEELEKAPA
LAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFN
PRIGMDALQIYPISQANANQRAGRAGRTGPGHCFRLYTQSAYKNELLTTTVPEIQRTNLA
NVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLD
PALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQVREKFAVPESDHLTYL
NVYLQWKNNSYSTLWCNQHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDVVRKC
ICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQC
VTAVDGEWLAELGPMFYSIKHAGKSRQENRRRAKEEVSAMEEEMALAEEQLRARREEQER
HNPLGSARSTKIYTPGRKEQGEPLTPRRTPARFGL
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcgagcgaggagtcgctgcaccggctggcggggacgagcccggaggccgag
gccggcgggctggtcctgcggaggcggagcgccgccgccgagcagcacgtcttcaaggcg
ccggcgccgcgggcctccttactgggcctggacgtgttggcggcccagaagcggcgggag
cgcgaggaggaggcggccggcgggaagcggtcccgggtgtcctcctacaaggactgggaa
gagggccgtgacgaggcgggcagccccgaggaggacgaggaggaggaggcggagagcggc
cggcgcagcaggagcgcccgcaaggacaggcattaccgctctgtccatgtggaaacacct
tcctacacagggggtgtcagtgaggagttttgggaacgcagccggcagcgggaaagggag
cgtcgggaacatggtgtctttgcttcctccaaggaggagaaggaacgaaagaaggaacac
agtcgggatcgggaccacgatcgtaaacgggaccgcgaggagcgggacagaagtcgtcac
agcagcagatcggagagagatggctcattggagcggagcagcaggaggagtgaaccagag
agccccagacatcggcccaaagatgcagccacaccatctcgctccagctgggaggaagat
gatagtggctacagtagtgcccgccgctcacagtgggaatctccttcacccatgccttcc
tatcgagactcagagcgcagccaccgggcatcgtcactgcgggacatggaccggagagac
cgggacaggtctgtaaggagcaagtactcggataagacaccattgcccaccccatcatac
aaatataacgagtgggctgacgaccggagacatctggggtccacgccgcggctgtccaga
gggagagggcggcgtgcagatggggaggagtgcattgcctttgagacggaggaggagcgg
cagcagtgggaggacgaccagcggcaagctgaccgggactggtacatgatggatgagggc
tacgatgagtttcacaaccccttggcctactcctctgaggagtatgtgaagaagcgggag
cagcacttgcacaagcagaggcagaagcgcatctcggcacagcggcggcagatcaatgag
gataacgagcgctgggagacgaatcgcatgctgaccagtggtgtggttcatcggattgaa
gtggacgaagattttgaggaggataactccgctaaagtgcatctgttggtgcacaacctg
gtgccccctttcctagatggaaggattgtcttcaccaagcagccggagccagtcatccct
gtcaaggacgccacctcagatttggccatcatagcccgaaaaggcagccaattggtgcgc
aagcacagggagcaaaaggagcgtaagagggctcagcataagcactgggagcttgcaggc
acaaaactgggagacattatggggatcaagaaagaggaggagaaggacgagatggtgaca
gaagatggcaaagtggattacagggctgagcagaagtttgctgaacacatgaaagaaaaa
agtgaagccagcagtgagttcgccaagaagaaatcaatcctggagcagagacaatatctg
cccatctttgccgtgcaacaggagctgctctccatcctcagagacaacagcattgtgatt
gtggtgggggagacagggagtgggaagacgactcagctgacgcagtacctccatgaggat
ggctacacagactatggcatgattggctgcacccagccccgcagagtggcggccatgtca
gttgccaagcgggtcagtgaagagatgggggtgcgtctgggagaggaggtgggctatgcc
atccgctttgaggactgcacgtccgagaacacagtgatcaaatacatgacagatgggatc
cttcttcgtgagtcactgcgagaggctgacctggacaactacagtgctatcatcatggat
gaggcacatgagcgctcactcaatactgacgtgctctttggcttgcttcgggaggtggtg
gcccgacgctcagatctgaagcttgttgtcacctcggccaccatggatgcagataagttt
gcctccttctttgggaatgttcctattttccacattcctgggcgcactttccctgttgat
attcttttcagcaagaccccacaagaggattatgtggaggcagcagtgaaacaagccctg
caggtccatttgtctggtgctcctggagacatccttgtcttcatgcctggccaggaggac
atagaggtgacctcagagcaaattgtggaacaccttgaggagctggagaaggcgcctgct
cttgctgtactgcctatctattctcagctaccatcagacttgcaggccaagatcttccag
aaggctccggatggggtcaggaagtgcattgttgccactaacattgcagagacctcgctg
acagtggacggcatcatgtttgtgattgactcgggctactgcaagttgaaggttttcaat
ccccgtataggcatggatgcgctgcagatctatcccatcagtcaagccaatgccaatcag
agggcaggccgagctggccgaacaggcccaggccactgcttcaggctctacacccagagt
gcctacaagaatgagctgctgacaaccacagtgcccgagatccagcgcaccaaccttgcc
aatgtagtgcttttgctcaagtccctgggtgtgcaggacctgctgcagttccacttcatg
gatccaccgcccgaggacaacatgctgaactccatgtaccagctgtggattctgggagcc
ctggataacacaggtggtctgacctcaacagggcgtctcatggtggagttcccactggat
cctgcactctccaaaatgctcattgtctcctgtgacatgggttgcagctctgagatcttg
ctcattgtctccatgttgtctgtgcctgccatcttttatcggcctaagggccgagaggag
gagagtgaccaagtgcgggaaaaatttgctgttccagagagtgatcacttgacttatctg
aatgtttacctgcagtggaagaacaacagctattctacactgtggtgcaaccagcacttc
atccatgccaaggccatgcggaaggtgcgggaggtgcgtgcccagctcaaggacattatg
gtgcagcagcggatgagcctagcatcctgtggtactgactgggatgttgtcaggaagtgc
atctgtgctgcgtatttccatcaagctgcaaagctgaagggcattggggagtacgtgaac
atccgcacaggcatgccctgccacctgcaccccacaagctctctgtttggcatgggctac
acaccagactacattgtgtatcatgagttggtcatgaccaccaaggaatatatgcagtgt
gtcactgctgtggatggagagtggctggcagagctgggccccatgttctacagtatcaaa
catgctggcaagtcacgccaggagaaccgccgccgtgccaaggaggaagtgtctgccatg
gaggaagagatggctttggctgaggagcagctgcgtgcccgccgggaggagcaggagcgc
cataacccactgggcagtgcaagatctactaaaatctacacccctgggcggaaggagcag
ggggagcccctgacgccacgacgcaccccagctcgctttggcctctaa
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