Astur gentilis (Northern goshawk): 126041500
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Entry
126041500 CDS
T08649
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
agen
Astur gentilis (Northern goshawk)
Pathway
agen03013
Nucleocytoplasmic transport
agen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
agen00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126041500
03015 mRNA surveillance pathway
126041500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agen03019
]
126041500
Enzymes [BR:
agen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126041500
5.6.2.5 RNA 5'-3' helicase
126041500
Messenger RNA biogenesis [BR:
agen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126041500
mRNA cycle factors
Common to processing body (P body) and stress granule
126041500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
126041500
NCBI-ProteinID:
XP_049663173
LinkDB
All DBs
Position
8:42710308..42734474
Genome browser
AA seq
1123 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQG
PPGAGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRLCRQPCASQSSLKDINWDSSQWQPLIQDRCF
LSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYED
AYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQ
GDEICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVW
KSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQ
VYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH
QTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRY
RALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAK
QLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNI
FYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEK
ITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKD
FIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQ
KVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRP
SNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKT
GRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQP
ELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagttcgcagaccctcaccttcctggatacggaggag
gccgagctgctcggcgccgacactcaaggatccgaattcgagtttaccgacttcactctt
cccagccaaacccaaaccccgcccgggcccgggcaggcgggaccgggacagggccaaggt
ccccccggagcgggtcagggaccgccgggaccgatcgaagcacaggttaatggacctgat
ggcattctacagaatggagctgtggatgataatgtggctaaaaccagccagcttctggca
gaattgaattttgaagaagatgaagaagatacgtattacacaaaggatcttcctgtgcat
gcttgcagttactgtggtatccatgaccctgcttgtgtggtttactgtaacaccagcaaa
aagtggttctgtaatgggcgtggaaatacatctggcagccacattgttaatcatcttgtg
agagcaaagtgcaaagaggtgactctccataaagatggacctctaggagagactgtcttg
gaatgttataactgtggatgtcgtaatgtgtttctccttggctttattccagctaaggca
gactctgtggttgttttgctgtgcaggttgtgcaggcagccatgtgccagtcagagcagt
ttaaaggatattaattgggacagttcacagtggcagcctcttatccaagatcgctgtttc
ctttcatggctggtaaagattccatctgaacaggaacagttgagagcacgtcagattacg
gctcaacagattaacaaactggaagaactttggaaggaaaatccatctgcaacccttgag
gacttagaaaagcctggtgttgatgaagaaccacagcatgtcctgcttagatatgaagat
gcttatcaataccaaaatatatttggtcctctagtcaagcttgaggcagactatgacaag
aaactcaaggagtctcagacccaagataacatcacagtcagatgggacctgggcttgaac
aagaaaagaattgcttatttcactttgccaaagactgattcagatatgcgtcttatgcaa
ggagatgagatctgcttgaggtataaaggagacctggcccctttatggaaaggaattggt
catgttatcaaagttcctgatagttctacagattatggtgatgagatagccattgaactg
aggagcagcgtcggagcgcctgtggaagttactcataacttccaagtagattttgtatgg
aagtctacttcatttgacagaatgcagagtgctttaaaaacatttgctgtggatgagact
tcagtgtctgggtacatctatcacaaactgttaggtcatgaggtagaagatgtaattatt
aaatgccagttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcag
gtttatgctgtgaagactgtcctgcagcgtcctctgagccttattcagggtccccctggt
accggaaaaacagtgacatcagccacaatcgtctatcatctggctagacagggcaatggg
cctgtgttagtctgtgctccgagtaatatagctgtagatcagttgactgagaagatccat
caaactggactgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaattgactctcct
gtatccttcttggcattgcataaccagatcagaaacatggatagcatgccagagcttcag
aaactgcagcagcttaaagatgaaactggagaactgtcatctgctgatgagaaacgttac
cgtgcactgaaacgaacagcggagcgtgaattacttatgaatgcagatgtgatctgttgc
acgtgtgtgggagctggtgatccaagacttgcaaaaatgcaattccgctccattctgatt
gatgaaagtacacaggctactgagccagagtgcatggtgccagttgtcctgggagcaaaa
cagcttattcttgtgggtgaccactgccagcttggtcctgttgtgatgtgtaaaaaagct
gcaaaggctggcctatctcagtctctctttgagaggcttgtggtgctggggattcgtccg
attcgcctgcaagtgcagtatcgcatgcatcctgcacttagtgcttttccatccaatatc
ttctatgagggttcactccagaatggtgttactgcagcggaccgtgtgaaaaaagggttt
gatttccagtggccacagccagataagccaatgtttttctatgttacacaaggacaggag
gaaattgccagctcaggcacctcttacttaaacaggacggaagctgccaatgtggagaag
ataactacaaagctattgaaagctggtgccaaaccagatcagattggcattattactcct
tatgaaggtcaacgatcctatctggtgcagtacatgcaattcagtggttccttgcataca
aagctctaccaggaagtggaaattgcaagtgtggatgccttccagggccgagagaaggac
tttattatcctttcttgtgtgagggccaatgaacaccaaggaatagggtttctgaatgac
cccaggcgtcttaatgtagctcttacaagagcaaggtatggagtaattattgttgggaac
ccaaaagcactgtctaaacaaccactttggaatcacctgctgaattactacaaggagcag
aaggttctggtggagggaccactgaataatctccgggaaagccttatgcagtttagcaag
ccccggaaacttgtcaataccatcaacccaggtgcccgtttcatgactactgcgatgtat
gatgcacgtgaggctattattccaggatctgtctatgaccggagcagtcaagggcgccca
tccaacatgtacttccaaacccatgaccagattgggatgattagtgctggccccagccat
gtcgctgctatgaacattcctatccctttcaaccttgtgatgccaccgatgccgccaccg
ggatactttggccaggctaatggaccagccgcaggacgtggggcgccaaaagggaagact
ggtcgtggtgggcgccagaaaaatcgttttgggattcctggaactagtcagtcaaacctt
ccaaatagtcaagcgagccaagatgtggtgtcccagcctttctcccagggtccactgact
caggggtatatctccatgagtcagccgtcacagatgagtcagcctgggctctcccaacca
gaattatcacaggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctg
tcacaggactctacttaccagggtgaacgtgcatatcaacatggtggagtgacgggactg
tcacagtattag
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