Astur gentilis (Northern goshawk): 126046476
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Entry
126046476 CDS
T08649
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
agen
Astur gentilis (Northern goshawk)
Pathway
agen04510
Focal adhesion
agen04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
agen00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
126046476
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
126046476
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
agen00536
]
126046476
Glycosaminoglycan binding proteins [BR:
agen00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
126046476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
126046476
NCBI-ProteinID:
XP_049674866
LinkDB
All DBs
Position
16:957561..975484
Genome browser
AA seq
1485 aa
AA seq
DB search
MPGRRPLRLAAGLAILFLAAVAAQDRDLPEAGSCLQDGQSYSDKDVWKPEPCRICVCDTG
TVLCDEIICEELRDCPSPEIPFGECCPICPTDQPSGQPGPKGQKGEPGDIKDVVGPRGPP
GPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQ
MAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGAAGPMGPR
GPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEA
GAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPA
GAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAKGSA
GAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAP
GPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAGPK
GATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPGVM
GFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPS
GFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP
GTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKD
GARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGAD
GQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAA
GRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEPGED
GPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGPV
GPPGLTGPAGEPGREGNPGSDGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGPT
GKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGLP
GPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPP
GNPGPPGPPGPPGTGIDMSAFAGLGQPEKGPDPIRYMRADEAAGSLRQHDVEVDATLKSL
NNQIESIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNMETGET
CVYPNPSSIPKKNWWTSKTKDKKHVWFAETINGGFHFSYGDEDLAPNTANIQMTFLRLLS
TEGSQNVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNSRFTYSVLEDGCTKHT
GKWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
atgcccggccgccgcccgctccgcctcgccgccggcctcgccatcctcttcctcgccgcc
gtcgccgcgcaggaccgagacctccccgaagcaggcagctgcctgcaggacgggcagagc
tatagcgataaggacgtatggaagccggagccgtgccgtatctgcgtgtgcgacacgggg
accgtcctctgcgacgagatcatctgcgaggagctgcgggattgtcccagccccgaaatc
cccttcggagagtgctgccccatatgtcccactgaccaacccagcgggcaacctggcccc
aaggggcagaagggcgaacccggtgacattaaagatgtcgtaggaccccgagggcctcca
ggaccacagggcccggcaggtgagcagggacaacgaggggaccgtggcgagaagggcgaa
aagggtgctcccggcccccggggcagggatggagaacccggcacccctggaaatcctggc
ccccctggtccccctggacctcccggcccccccggccttggtgggaacttcgcagctcag
atggcaggcggcttcgacgagaaggctggaggcgcgcagctgggcgtcatgcagggaccc
atgggccccatgggaccccgtggcccccctggaccctctggcgctcctggtccccaagga
tttcaaggcaaccccggcgagcctggcgagcccggcgctgctggtccgatgggtccccga
ggaccaccgggacctcctgggaaacccggtgatgacggtgaaacaggaaaacctggcaaa
tccggcgagcgtggccctcctggcccccagggtgctcgtggcttccctgggacgcctggt
ctccccggagtgaaaggccaccggggctaccctggattggacggtgccaaaggagaggca
ggggctcctggagccaagggcgaatccggctcacctggcgagaacggctcccctggcccc
atgggtccccgtgggctgcccggagagagaggacgtcccggcccctccggcgctgcgggt
gctcgtggcaacgacggtctccccggcccagctggaccccctggtcctgtcggcccagct
ggagcccccggcttccccggtgcccccggctcaaagggtgaagctggtcccaccggcgca
cgaggtcccgagggtgcccagggtccccgcggtgaatccggcacccccggctctcctggc
cctgccggtgcccccggtaacccagggactgacggcatccccggcgcaaagggctcggcg
ggtgccccgggcatcgccggcgctccaggcttccccggcccccgcggcccacccggaccc
cagggtgccaccggcccgctgggacccaagggacagacgggagaacccggcatcgcgggc
ttcaaaggcgaacagggaccaaagggcgagacgggacccgcaggaccccaaggtgccccc
gggccggctggcgaagaaggcaagagaggagcccgcggtgaacctggtgctgccggccct
gtgggaccacctggagagaggggtgctcctggcaatcgcggcttccccgggcaggatggg
ctcgctggacccaagggtgctccgggcgagcgtggtcccgccggcctcgcgggtcccaag
ggagccaccggcgatcccgggcgccccggagagcccgggctgcccggagccaggggtctc
accggccgtccaggtgatgctggtcctcaaggcaaagtcggcccaaccggtgctcctggc
gaggacggtcgccccggcccccccggcccgcagggtgctcgtggccagcccggcgtgatg
ggtttccccggtcccaaaggtgctaacggtgagcctggaaaagccggtgagaaaggcctc
cctggtgccccagggctgcggggtcttcctggcaaggatggtgagacgggagctgccggc
cccccaggacctgccggtcccgcgggtgagagaggagagcaaggagcccctggtccctct
ggcttccaggggctgcccgggccaccaggtccccctggagagagcggcaaacccggagat
cagggtgttcccggagaagctggtgcccccggtcttgtcggtcccagaggcgaacgcggc
ttccccggtgaacgtggctctcctggtgcacaagggctgcaaggtcctcgtgggctccct
ggcacaccgggcaccgacggacccaagggtgcaaccggaccagccggccccaatggtgcc
cagggtcccccagggcttcagggaatgcccggtgagagaggagcagccggcatcgccggt
cccaagggagaccggggagacgtcggagagaagggccccgagggagcccctggaaaggac
ggcgcacgcggtctgacgggtcccatcggtccccccggccccgctggccccaacggcgag
aagggtgaatctggccctcctggtccatctggtgctgccggtgcccgtggtgcccctggc
gagcggggcgaacccggtgcccctggtcccgccggatttgctggccccccgggtgccgac
gggcaacccggtgccaaaggcgaacaaggagagcccgggcagaagggtgacgccggtgct
cccggtccccaaggtccctctggcgcacctggcccgcagggtccgactggtgtcactggt
cccaaaggagcccggggtgctcagggcccccctggagccaccggattccccggtgccgct
ggccgtgtgggaccacctggccctaatggtaacccaggcccccccggtccccccggctct
gctggcaaagatggtcccaagggtgctcgtggtgatgccggtcccccgggccgtgctggt
gaccccggtctccaaggccctgccggcccccctggcgagaaaggtgaacccggcgaggac
ggccccgcgggtcctgacggtccccccggtccccaaggtttggcaggacagcgtggcatc
gtcggtcttcctggacagcgtggcgagagaggcttccctgggctgccgggaccatcgggc
gaacctgggaaacaaggagcacccggctctgcaggtgaccgcggcccccccggccctgtg
ggtccccccggtctgacgggtcctgccggcgaacctgggcgcgagggtaaccctggctct
gacggacccccgggcagggacggtgcagctggcgtgaagggcgatcgtggtgagaccggt
cctgtaggtgcccctggtgctcctggtgcccccggcgctcctggccccgtcggtcccacc
ggcaaacaaggagacagaggcgagacgggtgcacaaggtcccatgggtccctccggtcct
gctggcgctcgaggcatgccgggtccccaagggcctcgcggtgacaagggtgagacggga
gaggctggagagagagggctgaagggccaccgcggcttcaccgggctgcagggtcttccc
ggaccacccggtccttctggagaccaaggtgctgctggtcctgcgggtccctccggtccc
aggggtccccccggccccgtcggcccctctggcaaagatggctccaacggcatgcccggc
cccatcggtccccccggcccccgcggacgaagtggcgaaccaggtcctgcgggtcctcct
ggaaacccaggtccccccggtcctcccggtccccccggcacaggcatcgacatgtcagct
tttgctggcctgggtcagccagagaagggtcccgatcccatccgctacatgcgggcggac
gaggccgccggcagcctgcggcagcatgatgtcgaggtggacgccacgctcaagtccctc
aacaaccagatcgagagcatccgcagccctgagggctccaagaagaacccggccaggacc
tgccgtgacatcaagctttgccatcccgagtggaagagcggagactactggattgacccg
aaccagggctgcaccttggatgccatcaaagttttctgcaacatggagacgggcgagacc
tgcgtctaccccaaccccagcagcatccccaagaagaactggtggaccagcaagaccaaa
gacaagaagcacgtctggttcgcagagaccattaatggcggtttccactttagttacggc
gatgaagacctggctcccaacactgccaacatccagatgaccttcctccgtctcctgtcc
accgaaggctcccagaacgtcacttaccactgcaagaacagcatcgcctacatggacgag
gagacaggcaacctgaagaaagccatcctcatccaggggtccaacgacgtagagatcaga
gctgagggcaacagcaggttcacgtacagcgtcttggaggatggttgcacgaaacacact
ggcaaatggggcaagacagtcattgagtaccgatcgcagaagacctcgcgcctgcccatt
gtagatattgcacctatggacattggtggagccgatcaggagtttggcgtggatattggc
ccagtctgcttcttgtaa
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