Agromyces protaetiae: ET445_06960
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Entry
ET445_06960 CDS
T05835
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
agf
Agromyces protaetiae
Pathway
agf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ET445_06960 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agf03021
]
ET445_06960 (rpoC)
03400 DNA repair and recombination proteins [BR:
agf03400
]
ET445_06960 (rpoC)
Enzymes [BR:
agf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ET445_06960 (rpoC)
Transcription machinery [BR:
agf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ET445_06960 (rpoC)
DNA repair and recombination proteins [BR:
agf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ET445_06960 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF7491
Motif
Other DBs
NCBI-ProteinID:
QAY73125
UniProt:
A0A4P6FBJ2
LinkDB
All DBs
Position
1483736..1487638
Genome browser
AA seq
1300 aa
AA seq
DB search
MLDATTFDELRIGLATAEDIRKWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVIDVDDEGRHADLPGLENELRLEIKTIGDQRDARIADLMKRKEDE
LAALEAEGAKSDVKKRAEAAADKEMAGVRKSGDEQIAHLERVWEAFRTLKVGDLKPEDSD
FQELQDRFGMYFEAYMGAEAIKKRLLSFDLAAEAEDLHLQIAEGKGQKKIRAIKRLKVVN
SFLQTGASPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARVLMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTEKPGAAGEGR
AFSSIAEAILAFDQNRPGEIALDLNANVRIRLDGVHFAEGEEPEDFVEGKPYLMSTTLGR
AIFNEALPVDYPYFNEQAGKGQISQIVNDLAERYPKTEVAATLDRIKDAGFRWATRSGVT
VALSDIVELPQKREIVSKYEKQAAKVQAQFEKGLTTDLERRQELIQIWTKATDEVAKAMQ
EEFAAQPSNTINRMVTSGARGNWLQVRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAE
YFIATHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTTKGLELPIAALNAAG
ELVRDPNVENSVFARSLAADAVDAKGEVIAEAGADVGDVLIDKLVAAGVETIRVRSVLTC
ESAVGVCAACYGRSLATGKLVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQ
GLPRVQELFEARTPKGASPIAEAAGRITIDENDKQRKVILTPDNGDEPVVYNVLRRSTLL
VEDGQHVELGQQIIVGAVDPKEVLRVKGVRDVQKHLVNGVQDVYRSQGVPIHDKHIEVIV
RQMLRKVTVVDHGDTDLLPGELVDRSKYNEINRAALTEGKKTASARQEVMGITKASLATE
SWLSAASFQETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLAKYRNVAVEATEEA
KAERYPNRIFADDAAFSEGDLSFVDFDAFSSDDFTPGNYS
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgcaacgacgttcgatgagctccgtatcggcctggccaccgcagaggacatc
cgcaagtggtcctacggcgaggtcaagaagcccgagaccatcaactaccgcacgctgaag
cccgagaaggacgggctcttcggcgagcagatcttcggcccgagccgcgactgggagtgc
gcgtgcggcaagtacaagcgcgtgcgcttcaagggcatcgtctgtgagcgatgcggcgtg
gaggtcaccaagtcctccgtgcgccgtgagcgcatgggccacatcgagctggccgccccg
gtcacgcacatctggtacttcaagggtgtgcccagccgcctcggctacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatggtgatcgacgtcgac
gacgagggtcgtcacgccgacctcccgggccttgagaacgagctccgcctcgagatcaag
acgatcggcgaccagcgcgacgcgcgcatcgccgacctcatgaagcgcaaggaagacgag
ctcgccgcgctcgaggccgagggcgccaagtccgacgtcaagaagcgcgccgaggccgcc
gccgacaaggagatggccggcgtccgcaagtcgggcgacgagcagatcgcgcacctcgag
cgcgtgtgggaggccttccgcaccctcaaggtcggcgacctcaagcccgaagactccgac
ttccaggagctgcaggaccgcttcggcatgtacttcgaggcctacatgggcgccgaggcc
atcaagaagcgtctgctgagcttcgacctcgcggccgaggccgaagacctgcacctgcag
atcgccgagggcaagggtcagaagaagatccgcgccatcaagcgcctcaaggtcgtcaac
tcgttcctccagacgggtgcttcgccggcggcgatggtgctcgacgtggttccggtcatc
ccgcccgagctgcgtccgatggtccagctcgacggcggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtcatcaaccggaacaaccgtcttcgtcgtctcctcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgcccggtcacgggtaccggcaaccgcgccctcaag
tccctgagcgacatgctcaagggcaagcagggtcgcttccgccagaacctcctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggcgctcgagctcttcaagccgttcgtgatcaagcgcctc
atcgacctgagccacgcgcagaacatcaaggccgccaagcgcatggtcgagcgttcgcgc
ccgcaggtgtgggacgtcctcgaagagatcatccgcgagcgccccgtgctgctgaaccgt
gcgcccacgctgcaccgtctcggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctccacccgctcgtgtgtgcggcgttcaacgccgacttcgacggcgaccag
atggccgtgcaccttccgctgtcggtcgaggctcaggctgaggcgcgcgtgctcatgctc
gcgtcgaacaacatcctgaagccgtcggacggccgcccggtgaccctgccgtcgcaggac
atgatcatcggtctgcaccacctgacgaccgagaagccgggcgctgccggcgagggccgt
gcgttctcgtcgatcgccgaggcgatcctcgcgttcgaccagaaccgtccgggcgagatc
gcgctcgacctcaacgcgaacgtgcgcatccgtctcgacggcgtgcacttcgccgagggc
gaggagccggaagacttcgtcgagggcaagccgtacctgatgtcgacgaccctgggccgc
gcgatcttcaacgaggcgctcccggtggactacccgtacttcaacgagcaggccggcaag
ggtcagatctcccagatcgtcaacgacctggccgagcgctacccgaagaccgaggtcgcc
gcgaccctcgaccgcatcaaggacgccggcttccgctgggcgacccgttcgggcgtgacc
gtcgcgctctccgacatcgtcgagcttccgcagaagcgcgagatcgtgtcgaagtacgag
aagcaggccgcgaaggtccaggcgcagttcgagaagggtctcacgaccgacctcgagcgt
cgtcaggagctcatccagatctggacgaaggcgaccgacgaggtcgcgaaggcgatgcag
gaggagttcgcggcgcagccgtcgaacaccatcaaccgcatggtcacgtcgggtgctcgt
ggtaactggctgcaggtgcgcaacatcgccggcatgcgaggcctcgtgaacaacccgaag
ggtgagatcatccctcgcccgatcatctcgtcgtaccgcgagggcctgtcggtggcggag
tacttcatcgccacgcacggtgcccgcaagggtctcgccgacaccgctctgcgtaccgcc
gactcgggctacctgacgcgtcgtctggtggatgtctcgcaggacgtcatcatccgtgag
gacgactgcggcacgaccaagggcctcgagctcccgatcgccgcgctcaacgcggccggc
gagctcgtccgcgacccgaacgtcgagaactcggtgttcgcgcgcagcctggccgctgac
gcggtcgacgccaagggcgaggtcatcgccgaggcgggtgccgacgtcggcgacgtgctc
atcgacaagctcgtcgcggcgggtgtcgagacgatccgcgtgcgctcggtgctcacgtgc
gagtcggccgtcggcgtgtgcgcggcgtgctacggccgttcgctcgcgacgggcaagctc
gtcgacctgggcgaggccgtgggcatcatcgcggcgcagtccatcggcgagccgggcacc
cagctcacgatgcgtacgttccacacgggtggttcggcttcggccgacgacatcacgcag
ggtcttccccgcgtgcaggagctcttcgaggctcgcaccccgaagggcgcgtcgcccatc
gccgaggccgccggtcgcatcacgatcgacgagaacgacaagcagcgcaaggtcatcctg
acgcccgacaacggcgacgagccggtcgtctacaacgtgctgcgtcgttcgacgctgctc
gtcgaggacggtcagcacgtcgagctcggtcagcagatcatcgtcggcgccgtcgacccg
aaggaagtcctccgggtcaagggtgtgcgcgacgtgcagaagcacctcgtgaacggcgtc
caggacgtctaccgttcgcagggcgtgccgatccacgacaagcacatcgaggtcatcgtg
cgtcagatgctccgcaaggtcacggtcgtcgaccacggcgacaccgacctgctcccgggc
gagctcgtcgaccgttcgaagtacaacgagatcaaccgtgcggcgctcaccgagggcaag
aagacggcgtcggcgcgccaggaggtcatgggtatcaccaaggcttcgcttgcgaccgag
tcgtggctgtcggccgcgtccttccaggagacgacccgtgtgctcacgcaggccgccatg
gagggcaagagcgacccgctggtcggcctcaaggagaacgtcatcatcggcaagctcatc
cccgccggcaccggtctcgcgaagtaccggaacgtggcggtcgaggcgaccgaggaggcg
aaggcggagcgctacccgaaccgcatcttcgccgacgacgcggcgttcagcgagggcgac
ctcagcttcgtcgacttcgacgcgttctcgagcgacgacttcacgccgggcaattacagc
taa
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