Agrococcus sp. SGAir0287: C1N71_09495
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Entry
C1N71_09495 CDS
T05973
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
agg
Agrococcus sp. SGAir0287
Pathway
agg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1N71_09495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agg03019
]
C1N71_09495
Messenger RNA biogenesis [BR:
agg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C1N71_09495
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QCR19624
LinkDB
All DBs
Position
complement(1992682..1994355)
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AA seq
557 aa
AA seq
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MTAIAQPAPLEPGTLRIIPLGGLGEVGRNMTVFEIDGRLLIVDCGVLFPEEHQPGVDLIL
PDFGPIRDRLDDVEAVVLTHGHEDHIGAVPYLLKLRQDIPLIGSQLTLALVEAKLKEHRI
KPYTHTVREGGTEQLGPFGLEFVAVNHSIPDALAVAIRTKAGMALVTGDFKMDQLPLDDR
ITDLRAFARLGEEGVDAFLVDSTNADVPGFTAPERGIGPVLEQVIAATQGKVVVASFSSH
VHRVQQVLDAAHAHGRRVAFMGRSMVRNMGIAADLGYLTVPEGVLIDAKKAHDLPESKIV
FMSTGSQGEPMAVLSRIANGEHQISVGERDTVILASSLIPGNENAVYRVINGLMKLGANV
VHKGNAKVHVSGHASAGELLYCYNILGPRNVIPVHGEFRHLHAAASLARQTGVEHDRAFV
GENGTVWDLTDGDVRVAGQIEIGFVYVDGSSVGRIDDADLKDRRILAEEGFISIFLAIEA
QTGKCVVGPEIHARGFAEDDSIFDEIRPKILKALEEAAAQGVRDTHQFSQTVRRTVGRWV
GTRIRRRPMIVPVVIEA
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacggccatcgcacagccggctccgctcgagcccggcacccttcgcatcatcccgctc
ggcggcctcggcgaggtcggccgcaacatgacggtcttcgagatcgacggccgactgctc
atcgtcgactgcggcgtgctcttccccgaggagcaccagccgggcgtcgacctgatcctg
cccgacttcggtcccatccgcgatcggctcgacgacgtcgaggccgtcgtgctcacgcac
ggccacgaggaccacatcggtgccgtgccgtacctgctgaagctccgtcaggacatcccg
ctcatcggctcgcagctcacgctcgcgctcgtcgaggcgaagctcaaggagcaccgcatc
aagccctacacgcacacggtgcgcgagggcggcaccgagcagctcggtcccttcggcctc
gagttcgtcgcggtgaaccactcgatcccggatgcgctggccgtcgcgatccgcacgaag
gccggcatggcgctcgtgaccggcgacttcaagatggaccagctgccgctcgacgaccgc
atcaccgacctgcgcgccttcgcgcggctcggcgaggagggcgtcgacgcgttcctcgtg
gactcgacgaacgccgacgtccccggcttcacggcacccgagcgcggcatcggccccgtg
ctcgagcaggtcatcgccgccacgcagggcaaggtcgtcgtcgcgtcgttctcgagccac
gtgcaccgcgtgcagcaggtgctcgacgccgcccacgcgcacggtcgccgcgtcgccttc
atgggccgctcgatggtgcggaacatgggcatcgccgccgacctcgggtacctcacggtg
ccggagggcgtgctcatcgacgcgaagaaggcgcacgacctgcccgagtcgaagatcgtg
ttcatgtcgaccggctcgcagggcgagccgatggcggtgctctcgcgcatcgcgaacggc
gagcaccagatctcggtcggggagcgcgacaccgtcatcctcgcctcgagcctcatcccc
ggcaacgagaacgccgtctaccgcgtcatcaacggcctcatgaagctcggcgccaacgtc
gtgcacaagggcaacgccaaggtgcacgtctcggggcacgcctccgccggcgagctcctg
tactgctacaacatcctcggcccgcgcaacgtcatccccgtgcacggcgagttccgccac
ctgcacgccgccgcgtcgctcgcgcgccagacgggcgtcgagcacgaccgtgcgttcgtg
ggcgagaacggcaccgtgtgggacctcacggacggcgacgtgcgcgtcgccggccagatc
gagatcggcttcgtctacgtcgacggctcgtcggtcgggcgcatcgacgacgccgacctc
aaggatcgccgcatcctcgccgaggagggcttcatctcgatcttcctcgcgatcgaggcg
cagaccggcaagtgcgtcgtcgggcccgagatccacgcgcgaggcttcgcggaggacgac
tcgatcttcgacgagatccgcccgaagatcctcaaggcgctcgaggaggcggcagcccag
ggcgtgcgcgacacgcaccagttctcgcagaccgtgcgccgcacggtcggtcgctgggtg
ggcacgcgcatccgccgccgcccgatgatcgtgcccgtcgtcatcgaggcctga
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