Agrococcus sp. SGAir0287: C1N71_10765
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Entry
C1N71_10765 CDS
T05973
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
agg
Agrococcus sp. SGAir0287
Brite
KEGG Orthology (KO) [BR:
agg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agg03019
]
C1N71_10765 (hrpA)
Enzymes [BR:
agg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C1N71_10765 (hrpA)
Messenger RNA biogenesis [BR:
agg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C1N71_10765 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
AAA_22
T2SSE
nSTAND3
SLFN-g3_helicase
NACHT
FtsK_SpoIIIE
ABC_tran
PhoH
LYTB
AAA_29
ResIII
AAA_24
Motif
Other DBs
NCBI-ProteinID:
QCR20811
UniProt:
A0A4P8R8I8
LinkDB
All DBs
Position
2256167..2259904
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AA seq
1245 aa
AA seq
DB search
MEAMHIAYPDDLPVSARRDEIAAAIQEHQVVIVAGETGSGKSTQLPKICLELGRTAIAHT
QPRRIAARTIAERVAEELQVELGAEVGYQVRFSDKASAATMLTVMTDGVLLNRIHRDPDL
AQYDTIVIDEAHERSLTIDFLIGYLQRLLPRRPDLRVIVTSATIDPESFSRHFGGAPIIE
VSGRTYGVDVRYRPLTREAMTDDDGDDDAHDDVDPIDGIHDAIQEIWRDDAGDVLVFLSG
EAEIRDAQDALAGRLGAGVELLPLYGRLSAAEQHRVFERRPAGVQRRVVLATNVAETSLT
VPGIRHVVDTGTARISRYSTRAKVQRLPIEAISQASANQRSGRAGRVAPGIAIRLYAEED
FARRPAFTDPEILRTNLASVILQAATLGLGPLEDFPFLQPPERRAIADGTDLLRELRAIE
RSGAVTRVGRGIARLPVDPRFARMVLAGVDAGVADAVIPIVAALSIQDPRERPLEHRARA
DQLHARFADPTSDFVSLLNLWRYLREQQRQRSGNQFRRMCRDEHLNFLRVREWQDVVRQL
ERSLPKDAQPPRGRGRETSAEPFSTSASEIHKALLAGLLSQIGVRDAERRDFLGGRGVRF
HIHPSSTLGRKQPQAVMAAELVETSRLFARVVAGIDPAWAEPLAGDLAKRQWFEPRWSKR
AGAAIATERVTLYGVPIVPQRRIQLSRVDPVLARDLLIRHGLVAGEWQVRERFLDANRAL
IAEIERLEERQRRRDLLLDDERIVELYDARIPMHVTDARGFQRWWRDAKAETPDLLTFTR
DDLLGREDGPDEDAYPTTWRQGDQTLRLTYRFEPGADDDGLTVHVPIALLPRLSPAGFDW
LVPGMREELLTAMIKALPKHVRRHVVPAADWARSMLADLPAEPTDAPLAQVLADRIRSVA
HTPADASDVDWSRVPGHLLPRFVVEGAKGAVVGAGRDLAALQARLAQRATVEVAAAVSHD
LERQGVDGFQADLPRFVDVRQGQGTVRAYPGHRLAKGGRVDVALFSTEAERDAAEHAAVR
RMLADAVQSPQSYVQANLSNAERLALGASPYPSTARLFDDVLLAIVDEELGLGGPVRSAQ
DFARIRTAVSLGLVERMFDVTARVAAVLTAARAADAAIRETSSMAYMAQLADARATLDGL
AHDGFVVAAGVARLARLPVYVKAVEHRVRRLPEAAHRDVQWMAEVSEAVAALRAAGGSIP
LPSTAAPHLVEARWMIEELRVSLFAQTLGARGPISVQRIRRVLQG
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgatgcacatcgcctatccggacgacctgccggtctccgcgcgccgcgacgag
atcgcggccgccatccaggagcaccaggtcgtcatcgtcgccggcgagaccggctcgggc
aagtcgacgcagctgccgaagatctgcctcgagctcggccgcacggcgatcgcgcacacg
cagccgcggcgcatcgccgcgcgcacgatcgccgagcgcgtcgccgaggagctgcaggtc
gagctcggcgccgaggtcggctaccaggtgcggttcagcgacaaggcgtcggccgcgacg
atgctcaccgtcatgacggacggcgtgctgctgaaccgcatccatcgcgatccggacctc
gcgcagtacgacacgatcgtcatcgacgaggcgcacgagcgctcgctcacgatcgacttc
ctcatcggctacctgcagcgcctcctcccccgccgccccgacctgcgcgtcatcgtcacg
tcggcgaccatcgaccccgagtcgttctcgcggcacttcggcggcgcgccgatcatcgag
gtctccgggcgcacgtacggcgtcgacgtgcgctaccggccgctgacgcgcgaggcgatg
acggacgacgacggcgacgacgacgcgcacgacgacgtcgacccgatcgacggcatccac
gacgccatccaggagatctggcgcgacgacgccggcgacgtgctcgtcttcctctccggc
gaggcggagatccgggatgcgcaggacgccctcgcaggcaggctcggcgcgggcgtggag
ctgctccccctctacgggcggctgtcggccgccgagcagcaccgcgtcttcgagcgccgc
ccggcgggcgtgcagcggcgcgtcgtgctcgcgacgaacgtcgccgagacgagcctcacg
gtgcccggcatccgccacgtcgtcgacaccggcaccgcgcgcatctcgcgctactccacg
cgcgcgaaggtgcagcggctgccgatcgaggcgatcagccaggcgtcggcgaaccagcga
tccggccgcgcgggccgcgtcgcgcccggcatcgccatccggctctacgccgaggaggac
ttcgcgagacggccggcgttcacggatccggagatcctgcgcacgaacctcgcctccgtc
atcctgcaggcggcgacgctcggcctcggccccctcgaggacttccccttcttgcagccg
cccgagcggcgtgcgatcgccgacggcaccgacctgctgcgcgagctgcgggccatcgag
cgctccggcgccgtcacgcgcgtcgggcgcggcatcgccaggctccccgtcgacccgcgc
ttcgcgcgcatggtgctcgcgggcgtcgatgccggggtcgccgacgccgtcatccccatc
gtcgccgccctgtcgatccaggatccgcgcgagcggccgctcgagcatcgtgcgcgcgcc
gaccagctgcacgcgcgcttcgccgatcccacgagcgacttcgtctcgctgctgaacctg
tggcgctacctgcgcgagcagcagcgccagcggtcgggcaaccagttccggcgcatgtgc
cgcgacgagcacctgaacttcctgcgggtacgcgagtggcaggacgtcgtccgccagctc
gagcgctcgctgccgaaggatgcgcagccgccgcgcggtcgtgggcgggagacgagcgcc
gagccgttctcgacgagcgcgagcgagatccacaaggcgctgctcgccggcctgctcagc
cagatcggtgtgcgggacgccgagcggcgcgacttcctcggcggtcgcggcgtgcgcttc
cacatccacccctcgtcgacgctcgggcggaagcagccgcaggcggtgatggccgcggag
ctcgtggagacctcgcggctgttcgcgcgcgtcgtcgcgggcatcgaccccgcgtgggcc
gagccgctcgcgggcgacctcgcgaagcggcaatggttcgagccgcgctggtcgaagcgc
gccggcgccgcgatcgccaccgagcgcgtcacgctctacggcgtgccgatcgtgccgcag
cgacgcatccagctctcgcgcgtcgaccccgtgctcgcgcgcgacctgctcatccgccac
gggctcgtggccggcgagtggcaggtgcgcgagcgcttcctcgacgccaaccgcgcgctc
atcgccgagatcgagcggctcgaggagcgccagcggcgccgcgacctcctgctcgacgac
gagcgcatcgtcgagctgtacgacgcccgcatccccatgcacgtcaccgacgcgcgcggc
ttccagcgctggtggcgggatgcgaaggccgagacgccggatctgctcacgttcacgcgc
gacgacctcctgggccgcgaggacggccccgacgaggacgcctacccgacgacgtggcgg
cagggcgaccagacgctccgtctgacgtaccggttcgagcccggtgccgacgacgacggg
ctcacggtgcacgtgccgatcgcgctgctgccgaggctgagccctgcgggcttcgactgg
ctcgtgcccgggatgcgcgaggagctgctcacggcgatgatcaaggcgctgccgaagcac
gtgcggcggcacgtcgtgcccgctgccgactgggcgcggtcgatgctcgccgacctgccc
gccgagccgacggacgcgccgctcgcgcaggtgctcgccgaccgcatccgcagcgtcgcc
cacacgccggccgacgcgtccgacgtcgactggagccgcgtgcccggccacctgctgccg
cggttcgtcgtcgagggcgcgaagggcgcggtcgtcggcgccggccgcgacctggccgcg
ctgcaggcgcgcctcgcccagcgcgcgacggtcgaggtcgccgctgccgtgtcccacgac
ctcgagcggcagggcgtcgacggcttccaggcggacctgccccgcttcgtcgacgtgcgg
caggggcagggcaccgtgcgcgcctaccccgggcaccggctcgcgaagggcggccgcgtc
gacgtcgcgctcttctcgaccgaggccgagcgcgacgcggccgagcacgcggcggtgcgc
cggatgctcgccgacgcggtgcagtcgccgcagtcgtacgtgcaggcgaacctctcgaat
gcggagcggctcgcgctcggcgcctctccctacccgtcgaccgcgcgactgttcgacgac
gtgctgctcgcgatcgtcgacgaggagctcgggctcggcgggccggtgcgctcggcgcag
gacttcgcgcgcatccgcaccgccgtctcgctcggcctcgtggagcgcatgttcgacgtc
accgcgcgcgtcgccgccgtgctcacggcggcacgggccgcggacgcggcgatccgcgag
acgtcgtcgatggcgtacatggcgcagctcgccgacgcacgtgcgacgctggacgggctc
gcgcacgacggcttcgtcgtggccgcgggcgtcgcgcgcctcgcgcgcctgcccgtgtac
gtgaaggcggtcgagcaccgcgtgcggcggctgcccgaggcggcgcaccgcgacgtgcag
tggatggcggaggtgtcggaggccgtggccgcgctgcgcgccgcgggcgggtcgatcccg
ctgccctcgaccgccgcgccgcacctcgtcgaggcgcggtggatgatcgaggagctgcgc
gtgagcctcttcgcgcagaccctcggcgcgcgcggccccatctcggtgcagcgcatccgg
cgcgtgctgcagggctga
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