Agrococcus sp. SGAir0287: C1N71_12220
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Entry
C1N71_12220 CDS
T05973
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
agg
Agrococcus sp. SGAir0287
Pathway
agg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C1N71_12220 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agg03021
]
C1N71_12220 (rpoC)
03400 DNA repair and recombination proteins [BR:
agg03400
]
C1N71_12220 (rpoC)
Enzymes [BR:
agg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C1N71_12220 (rpoC)
Transcription machinery [BR:
agg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C1N71_12220 (rpoC)
DNA repair and recombination proteins [BR:
agg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C1N71_12220 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QCR20112
UniProt:
A0A4P8R6M7
LinkDB
All DBs
Position
complement(2563991..2567878)
Genome browser
AA seq
1295 aa
AA seq
DB search
MIDATTFDELRIGLATAEDIRKWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMIIEVDEDGRHEDLPGIEQEIRLEMAELEKRRDAAIAERLQQLETD
VAQLEEEGAKADQKRKVRDAGEREMAQIRKGTDEQIAHLERVFDDFRSLKVGDLKPEDAV
FHELVDRFGDYFEGYMGAEAIKRRLESFDLAAEAERLHLEIAEGKGQRKIRAIKRLKVVN
SFLQTGTNPAAMVLEVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLQHSQNIKHAKRMVERAK
PQVWDVLEEIIAERPVLLNRAPTLHRLGIQAFEPLLVEGKAIQLHPLVCSAFNADFDGDQ
MAVHLPLSVEAQAEARVLMLASNNILKPSDGRPVTLPTHEIVSGLHHLTTVKPGATGEGR
AFASVAEAIMAMDQGTLDLGALVKIRMEGLHFRDADRPEGFVDGEPFLLETSLGRALFSE
TLPADFPFVQEATTKPVISQIVNALAERYPKVVVAETLDKIKDAGFHWATRSGISVALSD
VITPAEKKEIVSKAEVAAQKIQDQYDNGFISDAERRQDLTELWTNATNDVQKATQAAFDE
GNSIYRMVTAGANGNWIQVRNITGMRGLVTNPKGEVIVRPIISSYREGLSVAEYFIATHG
ARKGSADTALRTADSGYLTRRLVDVSQDVIIREEDCGTEKGLDMPIAEMVDGVLVRGENV
ESSVYARTLATDVVAPDGTVLAVAGSDFGDVQINAVIAAGVEEVKVRSVLTCESTTGVCA
ACYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSVGASDITQGLPRVTEL
FEARTPKGASPIAEAAGRVRIEEDDKSKRIVIVPDDGSDEIAYPVLRRATLMVQDGDHVE
QGEQLQVGTVDPKEVLRVRGVREVQKHLVSGVQDVYRSQGVPIHDKHIEVIVRQMLRKVT
VVDHGETDLLPGELVDRSRYNELNRAALTSGKKTASARQEVMGITKASLATESWLSAASF
QETTKVLTEAALNGRKDSLVGLKENVIIGKLIPAGTGLSRYRDVEVEATEEAKAERYPNR
LFGDSSSFGDGDLDFVDFDSFTSGDAFGDEPGVYR
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgacgcaaccacgttcgatgagctccggatcggcctggccacggcggaggacatc
cgcaagtggtcgtacggcgaggtgaagaagccggagaccatcaactaccgcacgctgaag
cccgagaaggacgggctgttcggcgagcagatcttcggtccctcgcgggactgggagtgc
tcgtgcggcaagtacaagcgcgtgcgcttcaagggcatcgtctgcgagcgctgcggtgtc
gaggtcacgaagtcgtccgtgcgccgcgagcgcatgggccacatcgagctcgccgccccc
gtcacgcacatctggtacttcaagggcgtgcccagccgcctcggctacctcctggacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatgatcatcgaggtcgac
gaggacggccgtcacgaggacctgcccggcatcgagcaggagatccgcctcgagatggcg
gagctcgagaagcgccgcgacgcggccatcgccgagcgcctccagcagctggagaccgac
gtcgcccagctcgaggaggagggcgcgaaggccgaccagaagcgcaaggtccgcgacgcg
ggcgagcgcgagatggcgcagatccgcaagggcaccgacgagcagatcgcgcacctcgag
cgcgtgttcgacgacttccgctcgctgaaggtcggcgacctcaagcccgaggacgccgtc
ttccacgagctcgtcgaccgcttcggcgactacttcgagggctacatgggcgccgaggcg
atcaagcgtcgcctcgagtcgttcgacctcgcggcggaggccgagcgcctccacctcgag
atcgccgagggcaagggccagcgcaagatccgtgcgatcaagcgcctcaaggtcgtgaac
tcgttcctgcagacgggcacgaacccggctgccatggtgctcgaggtcgtcccggtcatc
ccgccggagctgcgtccgatggtgcagctcgacggtggccgcttcgcgacctccgacctg
aacgacctctaccgtcgcgtcatcaaccgcaacaaccgcctgcgtcgcctgctcgacctc
ggtgctcccgagatcatcgtgaacaacgagaagcgcatgctgcaggaggcggtcgacgcc
ctgttcgacaacggccgtcgcggccgtcccgtcacgggcaccggcaaccgcgcgctgaag
tcgctctcggacatgctgaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgctcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggcctgcccaagcagatggcgctcgagctgttcaagccgttcgtcatcaagcgcctc
atcgacctgcagcactcgcagaacatcaagcacgccaagcgcatggtggagcgggcgaag
ccgcaggtgtgggacgtgctcgaggagatcatcgccgagcgccccgtgctgctgaaccgt
gcgcccacgctgcaccgtctcggcatccaggcgttcgagccgctgctcgtcgagggcaag
gcgatccagctgcacccgctcgtgtgctcggcgttcaacgccgacttcgacggcgaccag
atggccgtgcaccttcccctctcggtggaggcgcaggccgaggctcgcgtgctcatgctc
gcctcgaacaacatcctgaagccgtccgacggccgtccggtgacgctgcccacgcacgag
atcgtgtcgggactgcaccacctcacgacggtgaagccgggcgcgacgggcgagggccgt
gcgttcgcgtcggtcgccgaggcgatcatggcgatggaccagggcacgctcgacctgggc
gcgctcgtgaagatccgcatggagggtctgcacttccgcgacgccgaccggccggagggc
ttcgtcgacggcgagccgttcctgctcgagacgtcgctgggtcgtgcgctcttcagcgag
acgctgcctgcggacttcccgttcgtgcaggaggcgacgaccaagccggtcatctcgcag
atcgtcaacgcgctcgcggagcggtacccgaaggtcgtcgtggcggagacgctcgacaag
atcaaggacgccggcttccactgggccacgcgctcgggcatctcggtcgccctctccgac
gtcatcacgccggcggagaagaaggagatcgtctccaaggccgaggtcgcggcgcagaag
atccaggaccagtacgacaacggcttcatctcggacgccgagcgtcgtcaggacctgacg
gagctgtggacgaacgcgacgaacgacgtgcagaaggcgacgcaggccgcgttcgacgag
ggcaactcgatctaccgcatggtcacggcaggcgccaacggcaactggatccaggtccgc
aacatcaccggcatgcgcggactcgtgacgaacccgaagggcgaggtcatcgtccgtccg
atcatctcctcgtaccgcgaggggctgtcggtggcggagtacttcatcgccacgcacggt
gcccgcaagggctcggccgacaccgccctccgcaccgcggactccggctacctcacgcgt
cgactcgtcgacgtgtcgcaggacgtcatcatccgcgaggaggactgcggcacggagaag
ggcctcgacatgcccatcgccgagatggtcgacggcgtgctggtgcgcggcgagaacgtg
gagtcctcggtctacgcgcgcacgctggccaccgacgtcgtcgcccccgacggcacggtg
ctcgcggtcgcgggctcggacttcggcgacgtgcagatcaacgcggtcatcgcggccggc
gtcgaggaggtcaaggtccgctcggtcctgacctgcgagtcgaccaccggcgtgtgcgcg
gcctgctacggccgctcgctcgcgacgggcaagctcgtcgacatcggcgaggcggtcggc
atcatcgccgcacagtcgatcggcgagcccggcacgcagctcacgatgcgcacgttccac
acgggtggctcggtgggtgcgagcgacatcacgcagggtctgccccgcgtgacggagctc
ttcgaggcccgcacgcccaagggcgcgtccccgatcgccgaggccgctggccgcgtgcgc
atcgaggaggacgacaagtccaagcgcatcgtcatcgtccccgacgacggcagcgacgag
atcgcctacccggtgctgcgtcgtgcgacgctcatggtgcaggacggcgaccacgtcgag
cagggcgagcagctccaggtcggcacggtcgacccgaaggaggtgctgcgcgtgcgcggc
gtgcgcgaggtgcagaagcacctggtgtccggcgtgcaggacgtgtaccgctcgcagggc
gtgccgatccacgacaagcacatcgaggtcatcgtccgtcagatgctccgcaaggtcacc
gtcgtcgatcacggcgagaccgacctgctgccgggagagctcgtcgaccgttcgcggtac
aacgagctcaaccgcgcggcgctgacgtcgggcaagaagaccgcgtcggcccgccaggag
gtcatgggcatcacgaaggcgtcgctcgcgacggagtcgtggctgtcggccgcctcgttc
caggagacgacgaaggtgctcacggaggccgcgctcaacggccgcaaggactccctcgtc
ggcctcaaggagaacgtcatcatcggcaagctcatccccgcgggcaccggcctgtcgcgc
taccgcgacgtcgaggtcgaggccacggaggaggcgaaggccgagcgctacccgaaccgt
ctgttcggcgactcgtcgtcgttcggcgacggcgacctggacttcgtcgacttcgactcg
ttcacctcgggtgacgcgttcggcgacgagcccggcgtgtaccgctga
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